Alteromonas naphthalenivorans: ambt_02810
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Entry
ambt_02810 CDS
T01513
Name
(GenBank) RecQ domain-containing protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
alt
Alteromonas naphthalenivorans
Pathway
alt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ambt_02810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alt03019
]
ambt_02810
03400 DNA repair and recombination proteins [BR:
alt03400
]
ambt_02810
Enzymes [BR:
alt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ambt_02810
Messenger RNA biogenesis [BR:
alt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ambt_02810
DNA repair and recombination proteins [BR:
alt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ambt_02810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
TniB
SWI2_SNF2
AAA_22
Thioredoxin_8
PAS
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AEF02116
UniProt:
F5Z9W1
LinkDB
All DBs
Position
complement(649015..651024)
Genome browser
AA seq
669 aa
AA seq
DB search
MTTDYSSLLQTLFGFPSFRSGQQEVVDSLLNQRSSLAIFPTGSGKSLCYQFVATQLPHLT
LVVSPLLALMKDQLAFLHSKGIAAASIDLTLTAEQNKQVMNDVRSGECKILMVSVERFKN
ERFRQFIESIQVSMLVIDEAHCISEWGHNFRPDYLKLPAYQQELNIPLVLLLTATATKKV
KLDMARRFNIAPDNIVQTGFYRPNLNLNVLPVVEKNKNQALLEELQRQQGAGIVYVTLQQ
TAEQVARFLQQNGVAASAYHAGLDSDIRQNIQQDFMVNKLQVVVATIAFGMGIDKSDIRF
VVHYDLPKSIENYSQEIGRGGRDGQNANCTVLANLDGLVTIENFVYGDTPDKSAIERVIK
DIASQAPEQSTSASHGGASGGTYQWETQINSLSTLSNIRQLPLKTLLVQLELAKVIRPLY
AYFAEFKYRFNTDKADILNLFSKERSDFLNAVFTHTDMKKVWGVVNFDSIFEHYGAERAR
VVTALEYLHEHNHIELASRLITDVYEVNQQALLADDSPNSLAENLAHYFAENERKEVKRI
AALVRFFELNTCLNYNLSAYFDDQQAPKECGHCSVCNGKVAKLDYSTPIPQPDKEQVAQA
MAALNTHLEGKFNETITESIYCRFLTAMTMPLFTRLKVRQVAGFGSCEFCRYADVKAVVS
EILDEGARP
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagactactcttcattgttacaaaccctttttggatttccatcgtttcgtagt
ggtcagcaagaggttgtagatagtctgcttaatcagcgctcgtcacttgccatatttccc
acaggttcaggtaagtcgttatgctatcaatttgtagcaacgcaactaccacatctaacc
ttagtagtgtcgccattgttggccctgatgaaagatcagctcgcctttttacatagtaaa
ggcatagctgccgcaagcatcgatttaacactaaccgctgaacaaaataagcaagtcatg
aacgacgtacgttctggtgaatgcaaaatactcatggtgtcggtagagcgttttaagaac
gaacgcttcaggcagtttatagagtcgattcaagtttcaatgttagtgattgatgaagcc
cactgtatctctgaatgggggcacaactttcgtcctgattacttgaaactaccagcctat
cagcaagaattaaacattcccttagtgttactgctgactgcgacggccactaaaaaagtg
aagcttgatatggcacgtcggtttaatattgcgccagataatattgtgcaaacgggattc
tatcggcccaaccttaatttgaatgtactgccggttgttgagaagaataaaaaccaagcc
ttactggaagaacttcaacgccaacaaggcgcgggtatagtatacgtaacgttgcaacaa
actgccgaacaagtcgcacggtttttacaacaaaatggggtcgcagcaagcgcctatcat
gccggactagacagcgatattcgccaaaacattcaacaagatttcatggtgaacaagcta
caagtggtagtggccactattgcgtttggcatgggcattgataaatctgatattcgtttt
gttgtacattacgacttacccaagtctatagagaactacagccaagaaattggtcgaggt
ggccgcgacggacaaaacgctaactgcacggtgctggccaacctagatggcctagtgaca
attgaaaactttgtttatggcgatacgccagacaaatccgctattgaacgggtaattaaa
gacattgccagtcaagctcctgagcaaagtactagtgcctcacacggcggcgcaagtggc
ggtacgtatcaatgggaaacccaaataaatagcttgtcgaccttaagcaatattcgtcag
ctaccgcttaaaaccttgctagtacaactagaactcgccaaggttattcgccctttatac
gcctattttgctgagttcaaataccgttttaataccgacaaagccgacattctcaaccta
tttagcaaagagcgaagcgattttctaaacgccgtcttcacccataccgatatgaaaaaa
gtatggggcgtagtgaatttcgacagtatttttgagcactacggggctgaacgcgcaaga
gtagtaacggcattagaatatttacacgaacacaatcatatcgagctagcgtcgcggtta
attaccgatgtatatgaggttaatcagcaagcactgttagcagatgattcacccaatagc
ctagccgaaaacctcgcccactattttgctgaaaatgaacgtaaagaagtaaaacgtatt
gccgccttagtacggttcttcgagcttaacacctgtttaaactataacttatcggcgtat
tttgatgaccaacaggcgccaaaagaatgcggccactgcagtgtgtgcaatggtaaagtg
gccaaattagactattcaacgcctatcccccagccagataaagaacaagtagcccaggcg
atggctgcccttaatactcaccttgaaggtaagtttaacgaaaccatcactgaatctatc
tattgccgttttttaaccgccatgaccatgcctttatttacccgtttaaaagtaaggcaa
gttgcagggtttggcagctgcgagttttgcagatatgcggatgtgaaagccgttgttagc
gagattttagatgaaggtgctaggccttaa
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