Alteromonas naphthalenivorans: ambt_04765
Help
Entry
ambt_04765 CDS
T01513
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
alt
Alteromonas naphthalenivorans
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
alt03016
]
ambt_04765
Enzymes [BR:
alt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
ambt_04765
Transfer RNA biogenesis [BR:
alt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ambt_04765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AEF02503
UniProt:
F5ZB68
LinkDB
All DBs
Position
1100766..1101923
Genome browser
AA seq
385 aa
AA seq
DB search
MQYELVTTFEKLDSVCNLAQQQKAVALDTEFVRTRTLSPHLGLIQLYDGHQLVLIDPLAI
DDLSPFIALMENTRVVKVLHSCSEDLETFLTAFNTVPTPVFDSQFAASILGLGASLGYAK
LVELLCDVSLDKGESRTDWIARPLREAQLSYAANDVLYLLPCYEHLVEKINEAGKLEWVY
QEIAQLADKKRSQMPEEFAYMQIKNNWRLSKEQLTVLQALAAWRLATARKKDMALNFVFK
EIHLYEAARLMPSSKSGLSQLHGVNPQSIRRYGETIITLISEARDKYAATSESQRLPKVS
RLIDVASYKQTLASLKAVSDKIANENNVSPEVIASKKQLNQVLKWYWFDNDETRVLGLKP
DVLSGWRAPLFEPHLEKLLGNKPSL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcaatatgaattagtaaccacctttgaaaaactcgatagcgtgtgcaatcttgcccag
caacaaaaagcggtagcgctagacactgagtttgttcgtacgagaacactgtcaccgcat
cttggtttaatccagttatatgatgggcatcagttagtacttatcgatccgcttgcgatt
gatgatctctcgccatttattgccttaatggaaaatacccgtgtggtaaaagtgctgcac
tcgtgctcagaagatcttgaaactttcctgaccgcttttaacaccgtaccaacacccgta
ttcgacagtcaatttgcggcgagtattttaggcttgggtgcatcgctaggatacgcaaag
ctggtggagttattgtgcgatgttagcctagataaaggcgagtctcgtactgactggata
gcacgccctttaagggaagcacagcttagctatgcggccaacgatgtactgtatttattg
ccttgctacgaacatttagtagaaaaaataaatgaagccgggaagttagagtgggtatat
caagaaatagcccagttagcagataaaaagcgcagtcaaatgccggaagaatttgcgtat
atgcaaattaaaaacaactggcgtttatcaaaagagcaacttaccgtactacaagctctt
gctgcatggcgactcgccactgcccgtaaaaaagacatggcattaaattttgtatttaaa
gaaatacatctttatgaagctgcgcgtctaatgccttcaagcaaatcgggtttgtctcaa
ctacacggggtgaacccacagtcgattaggcgctacggtgagaccatcattacgctaata
agcgaagcccgagataaatatgccgctacttctgagtcacagaggttacctaaagtcagt
cgtttgattgacgttgcaagctataagcaaacactagcatcgctaaaagcggtcagcgat
aaaattgccaacgaaaataatgtatcgcctgaagtcattgcctctaaaaaacaattaaac
caagtgctaaaatggtactggttcgacaatgacgaaacccgagtgctaggccttaagcca
gatgtattatctggttggagagcgccactatttgaaccccatttagaaaagttactaggt
aataaacctagtctctaa
DBGET
integrated database retrieval system
