Alteromonas naphthalenivorans: ambt_06055
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Entry
ambt_06055 CDS
T01513
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
alt
Alteromonas naphthalenivorans
Pathway
alt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ambt_06055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alt03400
]
ambt_06055
Enzymes [BR:
alt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ambt_06055
DNA repair and recombination proteins [BR:
alt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ambt_06055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AEF02748
UniProt:
F5ZCJ9
LinkDB
All DBs
Position
1386367..1389984
Genome browser
AA seq
1205 aa
AA seq
DB search
MLALYPSNKLEHLSFLLTTLIKHQPNGVFTPETILVESPGMQHWVSMQLAKEQGVAMNLD
FPLPVRFMWNTARLVLGKDKVPKQSPYRREVLVWRIDALLLEASGLEVSGQEASLQSSAA
FEQVNKYWLQAGSEQEQGVQRLQLATALADVYEQYLLYRPDWLFAWEESQRKSNDESEIW
QSEIWRHLVKQEPLHPARLHQLTLTALNNGDHLKSGDSELPNRIVVFAINTMAPQLIAFF
DALAAHIDIHIFHLNPSVNYWGDAKSDSELARQLRMDGLEKWMQQDQSNPLLGNLGQQGR
ELFNLLTDLETFEVSAFDAPIPADSETGETLLLNQIHNDILEALPAMPFASIQSTEADNT
DNADDSVTIMCTHSALREVQVLHDHLLHWLSQDSSRTPSDVLVMCPAIENYAPFVDTVFH
RVGTKPLGGNGPVRLPCSIADRSPMDAEPLIAAYMTLLHLPDSRFGVSDIVDYLQLDAVQ
KRFSIAQDDIDQMTVWLKQAHIHWGLNGSHKANVSSGATHENTYSWWWGIRRLLLGMLAP
DSEGVIDDMLTIPDVEGQSTVTLGKLIHVIELLGRFATELNTPRSPNAWGADLLALRDTC
FTPTKEQEHSWDLIAKVAADLSARCEEADYTYDLSLRQVRELLLSRFSSPDAGNHFMTGQ
VTVCSMLPMRSIPFKKVCILGLNDSEFPRKSTPLGLDLMAGPDRRVGDRSRRLEDRYLFL
EAIISARESLYLSYQGNDVKNNSERQPSLVLGEFLDMLDTGYQVNIGHYLKHAPLHPFSE
SAFTGTLPSYETGWLRLAQSLRDAATGGRNIDTSEESSEESSKESSKEAGEQAHSLAPLA
VDSSPENTSFQCMQVARAFSDPLAFFSQQRLGVNLSQSVTLLDNSEPFETNALVRYQVLD
AMFSSSASFDDANAATLQHSDRVVQFATLRGDIPNNPVAQEELELWKESAVALTQAMGPH
DAEPKRAQFAGKHFTFTASALEGGNSLMQPCAGKVNDIRALGYFMTQLVFSASDEVTPYT
QYPLDIFYCDWVKGETKLMKRSFPSVDKTTAYQILLSIESLFVEILSAPTPVYSSLMSAV
VSGTKKSPGTLLANKISLPTFLASLGGHDIEDRESVDIQGGVDTEDTDESCKSLIPDIRA
FFASDDAQRILKNWLQSSGQFTADIASNPYVKWLFPDGVSWHDVPATHAFLLFALVANIS
SQEQL
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgcgctttatccatcgaacaaacttgaacacctcagcttcctccttaccacgcta
attaagcatcaacccaatggtgtttttacgcctgaaaccatactggtagaaagcccaggt
atgcagcactgggtaagtatgcaacttgctaaagagcagggcgtggcgatgaatcttgat
tttcctttgccggttagatttatgtggaacacggcaaggctggtgttgggtaaagataaa
gtacctaagcaatcaccttatcgacgtgaagtcctcgtatggcgcattgatgccctttta
ctagaggcatcgggactagaggtatcaggacaagaggcatctctacaatcttcggcagcg
ttcgagcaagttaataaatactggttacaagcgggaagtgagcaagagcagggcgtacaa
cggttgcaattggcaacggcgcttgccgatgtgtacgagcaatatttgttatatcgtcca
gattggctgtttgcatgggaagaaagccagcgtaaaagcaatgatgaatctgaaatttgg
caaagtgaaatatggcgccatctagtcaagcaagaacctttacatcctgcacgactgcac
caacttaccctgactgcgttaaataacggcgatcatctaaaaagtggtgatagcgaatta
cctaatcgtattgtggtgtttgctataaacactatggcgccgcagttgattgcctttttc
gatgcgctagcggcgcacattgatattcatatttttcatctgaacccaagtgtgaattat
tggggcgatgcgaaaagcgatagtgaactagcaaggcagctgcgcatggatgggctagag
aaatggatgcagcaagaccaaagtaacccgctgttaggcaatttgggccagcagggcaga
gagctttttaatttgctcaccgatttagagacctttgaagtcagtgccttcgacgcacct
attcctgcagatagcgaaacgggtgaaacgttactattaaaccaaattcacaacgacata
ttagaagcgttacccgctatgcctttcgcaagcatacagagcacagaagcagacaacacc
gataacgctgatgacagtgttaccattatgtgtacgcattcagcgctgcgggaagtacag
gtgttgcacgatcatttactgcactggttatcgcaagactcatcgcgaacgccatccgac
gtgctggtgatgtgccccgcgatagaaaactatgccccatttgttgataccgtatttcat
agagtgggtaccaaaccgctagggggcaatgggcctgtacgcttaccatgttctatcgca
gatagaagccccatggatgcagaacctcttattgccgcctacatgacgctacttcatttg
ccagatagccgttttggcgtatcagatatcgtggattacttacaactagatgcggtacaa
aagcgctttagtattgcacaagacgatattgatcaaatgacggtatggcttaagcaagcc
catattcactggggattaaatggtagccacaaagccaatgtatcgtcaggggccacccat
gaaaacacttacagctggtggtggggaattaggcgtttattgttaggtatgttagcgcca
gatagtgaaggtgttattgacgacatgctgactattcctgatgtggaaggtcagtcgacg
gtaacgcttggtaagcttatccatgttattgagttactaggcagatttgccactgagctt
aataccccgcgaagcccgaatgcatggggtgccgatttattggccctgcgtgatacctgc
tttacgccaaccaaagaacaagaacacagctgggatcttattgctaaagttgccgctgat
ttgtctgctcgatgtgaagaagccgattatacctacgatttaagtttacgtcaggtgcgg
gaattactgttaagccgattttcctctcccgatgcgggtaatcactttatgacggggcaa
gtcacggtatgctccatgctacctatgcgtagtatcccgtttaaaaaagtgtgcatatta
gggcttaacgacagcgagtttccgcgtaagtctacaccgttagggctcgatttaatggcg
gggcctgatagaagagtgggcgatcgttctcgtcgtttagaagacaggtatcttttttta
gaagcgattatttcggccagagaaagcctatatttaagctaccaaggtaacgatgtaaaa
aataacagtgagcggcagcccagcctagtgttaggcgaatttcttgatatgttagacacg
ggctatcaggtaaacattggtcattatttaaaacatgccccattgcacccgtttagtgaa
agtgcttttaccggcacacttccaagctatgaaacgggctggttgcgtctagcccaatca
ctacgagacgccgctacgggtggccgcaacattgacaccagcgaagaaagcagcgaagaa
agcagcaaagaaagcagcaaagaagctggggaacaagcacattcactcgcgcctttggcg
gtagacagctcgcctgaaaataccagctttcagtgtatgcaggtggctcgagcgtttagc
gacccactagcgttcttttctcagcagcgattgggggtaaatttatcccaatcggtgact
ttgctagacaatagcgaaccttttgaaaccaacgcactagtgcggtaccaagtactcgat
gctatgttttcttccagtgcttcatttgatgatgccaatgcagcaacccttcagcacagc
gatagggtagtgcaattcgccacgcttcgtggtgacattcccaataacccggtggcgcaa
gaggagcttgagctgtggaaggaaagcgcggtagctcttacccaagcgatgggacctcat
gatgccgaacccaaacgggcgcaatttgcaggcaaacactttacgtttaccgcgagtgcg
cttgaaggtggaaacagcttgatgcagccgtgcgcaggcaaggtgaatgacattagagcg
ttaggttactttatgacacagcttgtgtttagcgcaagcgatgaagtaacaccctataca
caatacccgctagatatcttttactgcgattgggtaaaaggtgaaaccaagctaatgaag
cgtagctttccgtcagtagataaaaccacagcctaccaaattttgctaagtattgaatca
ttgtttgttgagatattgagcgccccaacacccgtatatagctcattaatgagtgcagta
gtcagtggcacaaaaaaatcccccggaactcttctggcaaacaaaatctccttacccaca
tttctggctagccttggcggccacgatatagaagatagagaaagtgtagatatacaaggc
ggcgttgatactgaagacacagatgaatcttgcaagtcgctaataccggatatacgtgca
ttttttgccagtgatgatgcccagcgcatactcaaaaattggcttcagtcatcagggcaa
tttactgctgatatcgcgagcaacccttatgttaaatggttatttcctgatggcgtgagt
tggcatgatgtgccagccacacacgcatttttgttgtttgcattggtggctaacatttca
tcacaggagcagttatga
DBGET
integrated database retrieval system
