Alteromonas naphthalenivorans: ambt_10030
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Entry
ambt_10030 CDS
T01513
Name
(GenBank) RNase E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
alt
Alteromonas naphthalenivorans
Pathway
alt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ambt_10030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alt03019
]
ambt_10030
03009 Ribosome biogenesis [BR:
alt03009
]
ambt_10030
Enzymes [BR:
alt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ambt_10030
Messenger RNA biogenesis [BR:
alt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ambt_10030
Ribosome biogenesis [BR:
alt03009
]
Prokaryotic type
rRNA processing factors
ambt_10030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AEF03532
UniProt:
F5Z8Y9
LinkDB
All DBs
Position
2234688..2237990
Genome browser
AA seq
1100 aa
AA seq
DB search
MKRMLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIARTYFPKGYRFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLNKLDLPDGMGLIVRTAGVGKSYEEL
EWDLKVLLTHWEAISKVAEEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQA
LQHIQLVRPDFASRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMKDAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGDSAHHVCPRCSGHGTIRGTESLAL
SILRILEEESIKENTGQIEAQLPVSVATYLLNEKRKAIQSLEKRHGVNLLLIPNANLETP
HYQVTRRRPDDILDDASYEVELMPTVETETETTTSVPVKREEPALKGLVAPTAAPVVAPK
AETPEAKAESSPSLFARIGKWLGDVLGGEDEKAKAEAEAKEKEKQKQSESRNNRGGNQSR
NRNGDDRRRKPRKNTRRNQPQNKDGEQEQRTPRSEQDDKPRASNNKPRKPRKPRDETQKP
KQDQSRDNAQDEAPKTQDRKSQDAKPQEAQKKQEVAERRKRRDTRRSVRVKKDDNTQSNE
APASKPVKSLAVDKPKPAKAAPAETEEVNTSPVQSTDAPAASESAAPVTQASQPADVKST
TEQDAQSSSEQSNNDTDENGQKRESRGRSRRSPRHVRAAGQRRKKEAQQSNDDNSAPVGE
QSTTNVETTPSQEVPASTAPAADVSESAPRAEDTQAAMPGKLEADTAHTQNENAQPAAID
ASADNAEAPTATKAEDTQATKPSVLAPSEEKAEPATTETASAKPEAPAAEVVQDEMQFEL
ASPKSEADAPKPAKADVTPAPVAEAAPKQVEINLGEDSAKAASEPKAKPAPKANLKKAKA
AVSKPITTGVAASSRGRINASAPMAAPASVDDTFNDVALTAKSDDSRPAIVVSGRSAAIA
KASAAASAPTTLPSSVDENA
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcaactcaattagaagagttgcgtgttgcccttgttgat
gggcagcggttatacgatttggacatcgaaagtcctgggcacgaacagaaaaaagcaaac
atttacaaaggtaaaataacccgcgttgagccaagcctcgaagcggcattcgtagactac
ggcgcagatcgccacggtttcctacctcttaaagaaatcgctcgcacttacttccctaaa
ggctaccgtttcgaaggccgtccaaacatcaaagatgttattaaggaaggccaagaagtt
atcattcaaattgataaagaagaacgtggccaaaaaggcgcagcgcttactactttctta
tcgctggctggtagctacttagtattaatgccaaacaaccctcgtgctggcggtatttct
cgtcgtatcgaaggtgatgagcgtacagaacttaaagaatctttgaacaaactagacctg
cctgatggcatgggcttaatcgttcgtaccgctggcgtaggcaaatcttacgaagaatta
gagtgggatttaaaagtactacttacccattgggaagcaatttctaaagtggctgaagag
cgtgaagcgcccttcttaattcaccaagaaagtaacgtaattgtacgtgcaattcgtgac
tatctacgtcgcgatattggtgaaattttaattgataaaaccagcatctacgaacaagcg
ctgcagcacatccaactagtgcgccctgacttcgctagccgcgttaagctttatcgtggc
gaagtacctttgttcagtcattatcaaattgaaagccaaattgagtctgccttccaacgt
gaagttcgcttaccttctggtggttcaattgttatcgaccctactgaagcgcttacttct
attgatattaactctgcccgcgcaacaaaaggtggagatattgaagaaacggcattaaat
acaaaccttgaagccgctgacgaaattgcccgtcaacttcgtttacgcgacttaggtggc
ttggttgttatcgattttatcgatatgaccccagtacgtcaccaacgtgaagttgaaaac
cgcatgaaagacgcagttcgcagcgatcgagctcgcgttcaactaggccgtatttctcgc
tttggcttgcttgaaatgtcacgtcagcgtttacgtccatcattgggtgattcagcgcac
catgtgtgccctcgctgttcaggtcacggcaccattcgtggtaccgagtcattagcgctg
tctattttgcgtattcttgaagaagaaagcattaaagaaaacacaggccaaattgaagca
cagcttcctgtatcagtagcaacctacttgcttaatgaaaagcgtaaagcaattcaaagc
ttagaaaagcgtcatggggttaacttattacttatccctaacgccaaccttgaaacacct
cactaccaagtcactcgccgccgtccagatgatattctagatgacgcaagctacgaagta
gagttaatgccaacggttgaaacggaaactgaaaccacaacttcagtgccggttaagcgt
gaagagccagcattgaaagggctagttgcgcctaccgcggcacctgttgttgcgcctaaa
gcagaaacacctgaagctaaagctgaaagctcaccatcactatttgcccgcataggtaaa
tggttaggtgatgtgcttggtggtgaagacgagaaagcgaaagcagaagctgaagcgaaa
gaaaaagaaaagcagaagcaatctgaaagccgcaataatcgtggtggcaatcagtctcgc
aatcgcaatggtgatgatcgtcgccgtaagccaagaaagaacacacgtcgtaaccagcct
caaaacaaagatggcgaacaagaacagcgtacgccacgttctgagcaagacgacaagcca
cgcgcaagtaacaataagcctcgtaagcctcgtaaacctcgtgacgagactcagaagcct
aagcaagaccaaagcagagataacgcgcaagacgaagcacctaagacccaagacaggaag
tctcaagatgctaagcctcaagaagcgcagaagaaacaagaagtggctgagcgccgcaaa
cgcagagatactcgtcgcagcgtacgtgtgaaaaaagatgacaatacacagtcaaacgaa
gcaccggctagcaaaccagttaaatctcttgcagttgataagcctaaacctgctaaagca
gcccctgctgaaactgaagaggttaatacttcaccagttcagtcaactgatgcaccagca
gcttctgaatcagcagcgcctgtaacacaagcctctcagccagctgacgttaagtcgacc
actgaacaagatgctcaatcttcttcagagcaatcgaacaacgacactgatgaaaatggt
caaaaacgtgaaagccgtggccgttcacgtcgctctcctcgtcatgttcgtgctgctggt
cagcgccgcaagaaggaagcgcagcagtctaatgatgacaacagcgccccggtaggtgaa
cagtcaacaacaaacgttgaaactacaccgtcacaagaagtaccagcttcaacggctcct
gccgccgacgttagtgaatcagcacctcgtgcagaagatacacaagcagcaatgcctggt
aaacttgaggcagacactgcgcatactcaaaatgagaatgcccagcctgctgctattgat
gcaagtgccgataatgctgaagcgcctactgcgactaaagcagaagacactcaagccact
aagcctagtgtactagcgccgtcggaagaaaaagcagaacctgcaacaacagaaaccgca
tcagctaagccagaagcgccagcagctgaagtagttcaagacgaaatgcagttcgagcta
gcttcgcctaaaagtgaagcagacgcacctaagccagctaaagctgatgttactcctgct
cctgtcgctgaagctgcacctaaacaggttgaaattaacctaggtgaagattctgctaaa
gcagcaagtgaacctaaggctaaacctgcgccaaaagcgaaccttaagaaagccaaagca
gcggtatctaagcctattactacaggtgtagcagctagcagccgtggtcgtattaatgca
tctgcgccaatggcagcgccagcatcggttgatgacacgttcaatgacgtagcgcttacc
gctaagtctgacgatagccgcccagccattgtagtatcgggtagaagcgcagctattgcg
aaggcaagtgccgccgcatcagcaccaacaacactgccatccagtgttgatgaaaacgcc
taa
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