Alteromonas naphthalenivorans: ambt_10120
Help
Entry
ambt_10120 CDS
T01513
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
alt
Alteromonas naphthalenivorans
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alt03032
]
ambt_10120
03400 DNA repair and recombination proteins [BR:
alt03400
]
ambt_10120
Enzymes [BR:
alt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ambt_10120
DNA replication proteins [BR:
alt03032
]
Prokaryotic type
DNA Topoisomerases
ambt_10120
DNA repair and recombination proteins [BR:
alt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ambt_10120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_LysW
Gp-FAR-1
Toprim_2
Toprim_4
CEP104_ZnF
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AEF03550
UniProt:
F5Z907
LinkDB
All DBs
Position
complement(2251755..2254421)
Genome browser
AA seq
888 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTKALGKVEPKKPAKELKTYSEE
DKQEYLRRHEYLKLVDRMGVDPEQNWKAHYQVLQGKEKVVNELKRLAKDADTIYLATDLD
REGEAIAWHLQELLGSKGKTYQRVVFNEITKNAIQEAFSDPGEVNVARVNAQQARRFLDR
VVGFMVSPLLWKKIARGLSAGRVQSVAVRLVVDREREIKAFVPEEFWDIHADLTSEQKAA
LRMLVAKHEGKAFKPVNKAQADKALEDLNGAKYLVESRESKPTSSRPSAPFITSTLQQAA
STRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQEALDNCRAYIDDNFGSQYLPESPN
RYGSKEGAQEAHEAIRPSSVKVNAAHLGDMERDAQRLYELIWRQFVACQMTPAKYDATTI
RVGAGNYELTAKGRVLKFDGWTRVQPQLRKKGEEELMLPDVQKGDVLNLNALDPKQHFTK
PVARFNEASLVKELEKRGIGRPSTYASIISTIQDRGYVRLENKRFYAEKMGEIVNDRLME
NFDDLMSFDFTANMEQQLDDIAEGNKDWKDVLNLFYSDFYGKLLNAEKAPEEGGMRLNQA
IPAGITCDKCGREMNVRTASTGVFLGCSGYNLPPKERCTNTMNLTPGDEVVKVDDEEELE
TEALRAKKRCPICSTAMDSYLVDETRKLHVCGNTPTCEGTLVETGTFKIKGYDGPIIECD
KCGSDMELKNGRFGKYFGCTNEECKNTRKLLRNGEAAPPKEDPVDLPELPCEKSDAHFVL
RDGASGIFMAAHNFPKSRETRAPKVEELARFRDRISEKFYYLADAPQKDPEGNLAIVRYS
RKTKQQYVMSENEAGKATGWSAWYNDGKWETQAASKPAAKTKAKAKKK
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatctctagtcatagtcgagtcgccagccaaagcgaaaacgataaataaatat
cttggtaaagattttatcgtaaaaagttctgtcggccatgttcgcgatctgcctacgaag
gcattgggcaaagttgagcccaaaaagccagcgaaagaactcaaaacttatagcgaagaa
gacaagcaagaatatcttcgcagacatgaatatttaaaacttgttgaccgcatgggtgta
gacccagaacaaaactggaaagcccactatcaggttttacagggtaaagaaaaagtggtt
aacgagcttaaacgcttggccaaagacgctgacactatttatctcgcaacggatttggat
agagaaggggaggctattgcgtggcacttacaagagttgctgggcagtaaaggcaaaacc
tatcagcgtgtggtgtttaacgaaattactaaaaatgccattcaagaagccttctcagac
ccaggtgaagtgaacgttgctcgcgtaaatgcacagcaagcaagacgtttcctcgaccgc
gttgtgggcttcatggtatcgccgctactttggaaaaagatagcacgtggtttatctgct
ggccgagttcaatcggtagctgtacgtctagtcgttgaccgtgaacgtgagattaaagcg
tttgttccagaagagttttgggatattcatgcagacttaaccagtgagcaaaaagcggcg
ctgcgtatgttggtagccaagcatgaaggtaaagcgtttaaaccggttaataaagcgcaa
gcagacaaagcattagaagatttaaatggcgctaagtacttagttgaaagccgtgaatct
aagcctacgtctagccgaccttcagcaccgtttattacctcaacgttgcagcaagccgcg
agtacccgtttaggttttggtgttaagaaaaccatgatgatggcgcagcgcttgtatgaa
gcgggttacatcacttatatgcgtactgactcaacaaacttgagccaagaagcactggat
aattgccgcgcctatatcgatgataattttggtagccaatacctaccagaatcgcctaat
cgttatggtagcaaagaaggcgcacaagaagcgcacgaagcgattcgtccttcaagtgtt
aaggtaaatgctgcgcatttaggtgatatggagcgtgacgctcaacgcctttacgagctt
atttggcgccagtttgtagcgtgtcaaatgacgccggctaaatacgatgccaccactatt
agagtgggtgcaggtaattacgagttaacggcgaaaggtcgtgtgttgaagtttgacggc
tggacacgtgttcaaccacagcttcgcaaaaaaggtgaagaagagttaatgctgcctgat
gttcaaaaaggtgatgtattaaacttaaatgcgcttgatcccaagcagcactttaccaaa
ccagtggcgcgttttaacgaagcgtctttggtaaaagaattagaaaaacgcggcattggc
cgaccttctacatacgcaagtatcatttctaccattcaagatcgcggttacgttcgcctt
gaaaataagcgtttttatgctgaaaaaatgggtgaaatcgttaacgaccgtttgatggaa
aactttgatgacctaatgagtttcgacttcaccgccaacatggagcaacagcttgatgat
atagcggaaggtaacaaagattggaaagacgtacttaaccttttctacagcgatttttat
ggcaagttgcttaatgccgagaaagcccctgaagaaggcggaatgcgccttaatcaagct
attcctgctggcattacgtgtgacaaatgcggacgtgaaatgaacgtgcgtacggcgtct
accggtgtattccttggatgctctggttataacttaccgccaaaagaacgctgcactaac
accatgaacctgacaccaggtgatgaagtggtgaaagtagatgacgaagaagagttagaa
accgaagcgttacgtgctaagaagcgttgtcctatatgcagtactgctatggacagctac
ttagtggacgaaacccgtaagttgcatgtgtgtggtaatacaccaacctgcgaaggtacc
ttagtggaaaccggtacgttcaagatcaaaggttacgatggtcccattatcgaatgtgat
aagtgtggcagtgacatggagctgaaaaacggtcgctttggtaaatacttcggttgtacc
aatgaagaatgtaagaatacgcgtaagttgttacgtaacggtgaggctgcgccacctaaa
gaagatccggtagatttaccagaacttccttgtgaaaaatcggatgcgcactttgtatta
cgtgatggtgcttcgggtattttcatggcggcgcataacttccctaaatctcgggaaacg
cgtgcaccaaaagtggaagagctggcgcgctttagagatagaatttctgaaaaattctat
tatctggccgatgcaccgcaaaaagatccggaaggtaaccttgctatcgttcgctacagt
cgtaagaccaagcagcaatatgtgatgtcggaaaatgaagcgggtaaagctacgggttgg
tctgcatggtataacgacggtaagtgggaaacacaagccgccagtaaacctgctgctaaa
accaaagcgaaagccaaaaagaaataa
DBGET
integrated database retrieval system
