Alteromonas naphthalenivorans: ambt_10195
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Entry
ambt_10195 CDS
T01513
Name
(GenBank) helicase, ATP-dependent
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
alt
Alteromonas naphthalenivorans
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alt03019
]
ambt_10195
Enzymes [BR:
alt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ambt_10195
Messenger RNA biogenesis [BR:
alt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ambt_10195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
ResIII
NACHT
T2SSE
nSTAND3
NTPase_1
HA2_N
SLFN-g3_helicase
ABC_tran
AAA_25
AAA_23
SRP54
Motif
Other DBs
NCBI-ProteinID:
AEF03565
UniProt:
F5Z922
LinkDB
All DBs
Position
complement(2272258..2276286)
Genome browser
AA seq
1342 aa
AA seq
DB search
MSSPNAPSSPVAFQIKPLYAQLDDCLSADKFPLKRRIQQFTKQLNSGEKVKDEKVKDSNQ
TDASTDSPQSKLATRYEKLVNDIQASKDKRAFRLKNLPEVTYPPLPVSDKKDDIKAAIAA
NQVVIVAGETGSGKTTQLPKICLELGRGVSGMIAHTQPRRLAARSVATRIAEELNTPLGE
KVGFKIRFSDQVSERSYVKLMTDGMLLAEMQNDRFLNQYDTIIIDEAHERSLNIDFLLGY
LRQLLDKRPELKLIITSATIDPERFSKHFNNAPIIEVSGRTYPVEIRYHSPEDNENDTDQ
TDAIVGAVDELLTEKPGDILVFLSGEREIRDTQDALMRRQYRNTEIVPLYARLSAAEQNR
IFQSHTGRRIVLSTNVAETSLTVPGIKFVIDPGVARISRYSARSKVQRLPIEAISQASAN
QRAGRCGRVSDGICIRLYSEDDYLGRPEFTDPEILRTNLASVILQMLALGLGDIADFPFV
QPPDNRNINDGFRLLEEIQAIVKQKGRMQLTKMGRQIARLPIDPRYARMVVEAQRTNALM
EVMVIAAGLSIQDPRERPQDKRQQADEKHSEYTDKDSDFISLYNLWDAFKAQQNELSQNH
LRKWCKSQFINYLRMREWQDIVSQLKKSVAELGFGIVKNEPDYQAIHEAIASGLLSHIGF
KDKDREYLGSRNTRFMIFPGSGLSKSQPKWVMAAELVETSKLFARMVAKIDPVWIESLAG
HVSQHSYSEPHWSKKRGAVIAFEKVTLFGLPIVMKRAKVYSLIDPPVCHELFIREGLVEG
NTRLNFGFLKENQALLEQADEFEQKTRRRDLLVDDDELVRFYASRIPVEANNEAAFKKWY
KNQEALVKQAGGEKSGTEKISDVLTFTEDDVYRQQPGQAIENAFPDAWRQGNITMGLRYH
FEPNADDDGVSVIIPLPVLNQVENIGFDWQVAGLRHERIVSMIRTLPKRLRRNFVPAPNF
ADACIADISETDKNGRPISLVEAVTAKLRKMTGITVEEDEWNLSQLDRHLIMHFTVVNDK
GETIARSDDLHALKQQCAGQVKETFEKAATPELERSGIESWDFDTLPTTFAQKMGGFEVQ
AFPALVEKGDKVDIALIDEPEKAQSMHRKGVNVLIKNAMPSPLNYLQSKLPNKAKLGLYF
NPFGQIKALIDDCIFAGIDALVGEYCEKHNTDIRSKADFDACVDIVRAEINDKVLEIAKQ
VEQGLTLAHQCQKQMKGNVPLNMINALGDCKGHLSSLVFPGFVSDIGEARLNDWNRYIKG
LSRRLEKLPIDPNKDRMHQLTVEKALSEWEKACGKYPKGKVPEALLDTRWMIEELRVSLF
AQALGTAYPISAKRISLFLADF
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcacctaacgcgccttcgtcgcctgtcgcttttcaaattaaaccgctttatgca
caactcgatgattgtctgtcggcggataaattcccgttaaaacggcgtattcagcagttc
acgaagcagctaaatagcggtgaaaaggtaaaggatgaaaaggtaaaggatagtaaccaa
acagatgcttctacagatagcccgcaaagcaaactagccactcgatacgaaaagcttgtt
aacgatattcaagcatcaaaagataagcgtgcgttcaggctaaagaatttgccagaagtg
acgtatccgccactgccggtgagtgataaaaaagacgatattaaagcagccattgcagca
aatcaggtggtgattgtagcgggtgaaaccggctcgggtaagactacccagttgccgaaa
atatgtttagagcttggccgtggtgtcagcggcatgatagcgcatacccagccacgtcga
ttggctgctcgcagtgtggcaactcgtattgctgaagagctcaacacgccgcttggtgaa
aaggtaggctttaagattcgttttagcgatcaggttagcgagcgaagctacgtaaaactg
atgacagacggtatgttgctggcagaaatgcaaaacgaccgtttcttgaatcaatacgac
accattattattgatgaagcccacgaacgtagcttaaacatcgacttcttgctgggctat
ttaaggcagctattagacaagcgccctgaacttaaactcattattacctcggctactatc
gaccccgaacgtttctcgaagcactttaataatgcgcctattattgaagtgagcggacgt
acgtatccagttgaaattcgttatcacagccctgaagacaatgagaacgataccgatcaa
accgacgccattgtgggggcggttgatgaactattaaccgagaaaccgggcgatatttta
gtgttcttaagtggggagcgtgaaattcgcgacacccaagatgcgctcatgcgcaggcaa
taccgcaatactgaaatagtgcctttgtatgctaggctttccgccgcagaacaaaaccgt
attttccaatctcacaccggtaggcgcattgtgttgtctaccaacgtggcagaaacctcg
ttaactgtgccgggcattaagtttgttatcgacccaggtgtggcgcgtatttcacgctac
agtgctcgcagtaaagtacagcggttgcctatagaagctatatcgcaagcgtctgcgaat
cagcgggcagggcgatgtggacgtgtttccgatggtatctgtattcgtttatacagcgaa
gatgattaccttggccgccctgaatttaccgacccagaaatactgcgtactaatttggcc
tcagttattttgcaaatgcttgcgttgggtttgggggatattgccgattttccgtttgtt
caaccgccagataaccgcaacatcaacgacggttttaggttgctagaagaaattcaggcc
atagtgaaacaaaaaggccgtatgcagcttaccaaaatgggtagacagattgcccgttta
cctatcgatcctcgctacgcccgtatggtggttgaagcgcagcgtaccaatgcgttaatg
gaagtcatggtaattgccgcggggctatctattcaagaccctcgtgagcgcccacaagat
aaacgccaacaggcggatgaaaagcacagcgaatataccgataaagattcagactttatt
agtttgtataacttgtgggacgcgtttaaagcgcagcaaaatgaattaagccagaaccac
cttcgtaaatggtgtaagagccaatttattaattatctgcgtatgcgcgaatggcaagat
attgttagccaacttaaaaagtcggtggccgaactgggctttggcattgtgaaaaacgag
ccagattatcaagctattcacgaagccattgccagtgggttactgtcgcatattggcttt
aaagataaagacagagaatacttaggctcgcgcaacacccgctttatgattttcccaggt
tctgggctttctaaatcgcaacctaaatgggtaatggcggctgaactcgttgaaacctct
aagctattcgcccgaatggtggcaaaaatagaccccgtgtggatagagtctttagctggg
catgttagtcagcatagttattctgagccccattggtcgaaaaaacgcggtgcagttatc
gcgtttgaaaaagtgaccttgtttggtttacctatagtgatgaaacgagccaaagtgtat
agcctaattgacccgccggtatgtcacgaactctttattcgggaaggcttagttgaaggt
aatacgcggcttaattttggtttcttgaaagagaaccaagctttattagaacaagccgat
gagtttgaacaaaagacccgacgccgagatcttttggttgatgacgacgaattagtccgt
ttttatgcctcgcgtattccggtagaagcgaacaacgaagccgcgtttaagaaatggtat
aaaaaccaagaagcgttagttaagcaagcgggcggcgaaaagtctggtaccgaaaagata
agcgacgtgcttacctttaccgaggatgacgtgtatcgccaacagcctggacaagccata
gagaacgcctttccggatgcatggcgacagggcaacatcaccatggggcttcgttatcat
tttgagccgaatgcggatgacgatggtgttagcgtgattattcctttgccggtactcaac
caagtggaaaatattggctttgattggcaagtggcagggctacgacatgaacgcatagtg
tcgatgatcagaaccttgccaaagcgcttacgccgcaactttgtgcctgcgcctaacttt
gcggatgcctgcattgcagatataagcgagacggataaaaatggccgccccataagcctt
gtagaggcggttaccgccaagcttcgtaaaatgaccggtattaccgtagaagaagatgaa
tggaatctgtcgcagctagatagacacctgatcatgcactttacggtagtaaacgataaa
ggcgaaaccattgcgcgctcagacgatttacacgctcttaaacagcaatgtgctgggcaa
gtaaaagaaacctttgaaaaggcggctacgcctgagcttgagcgtagtggtattgaaagt
tgggatttcgacacactgcctactacttttgcgcaaaaaatgggtggctttgaagtacaa
gctttccccgctttagtagaaaagggcgacaaggtagatatcgcgcttatagacgagcca
gaaaaagcgcaatcaatgcaccgaaaaggtgtgaacgtgttaattaaaaacgccatgccg
tccccgctaaattacttgcaaagtaagttacccaataaagcgaagctgggtctttacttt
aatccgtttgggcaaattaaagcgcttattgatgattgtatttttgccggtatagatgcg
ctggtgggcgaatattgtgaaaagcacaacacagatattcgtagcaaagcggatttcgat
gcctgcgtagatatagtgcgcgctgaaataaacgacaaagtattagaaatagccaagcag
gtagagcagggcttaacgctcgcacatcaatgccaaaagcaaatgaaaggcaatgtgccc
cttaacatgataaacgcattgggcgattgcaaagggcatctttctagcttggtattccca
gggtttgtttcggatataggtgaagcacggcttaacgattggaaccgatatataaaaggc
ttgtctcgtcgtttagaaaaactaccgattgatccgaataaagacagaatgcatcaactc
accgttgaaaaagccctaagtgaatgggaaaaagcgtgtggtaaataccctaaaggcaaa
gtaccagaagcattattagatacacgttggatgattgaagaattaagggtgtctttattt
gcccaagcattaggtacggcttaccccatatcggcaaagcgtatctcactgtttttagct
gacttctag
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