Alteromonas naphthalenivorans: ambt_10405
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Entry
ambt_10405 CDS
T01513
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alt
Alteromonas naphthalenivorans
Pathway
alt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ambt_10405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alt03400
]
ambt_10405
Enzymes [BR:
alt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ambt_10405
DNA repair and recombination proteins [BR:
alt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ambt_10405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
AAA_30
SecA_DEAD
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AEF03605
UniProt:
F5Z962
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All DBs
Position
2327538..2331056
Genome browser
AA seq
1172 aa
AA seq
DB search
MTATLLSLPLPTQKKSASVQDHKQWGQLQGSSAALCITQAQAQYNGPIVLVTADTPSALK
LEKELAFFMPGGASGDKSGETNVPITVFPDWETLPYDSFSPHQDIVSQRLETLYRFTQQV
NGIFIVPVNTLMQRLAPTDYLAKYLLMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEF
SVRGSIIDLFPMGSDKPFRIDLFDDEVDSIRFFDTETQRSGDTVEKIKLLPAREFPTDKE
SITLFRQRFLEKFDANNASESVFSQVTKGTMPSGVEYYLPLFFDKTATLFDYLHPKSVLL
LHGDVQDASEFFWADIQERYEQHRYNPARPLLPPEDLFLPKNTLFGEIKQWPRVTLTKDV
IEEKPGSFNLGCDKLDDIAINTQKKVPAEQLIATVNNAKKRGAKVLFCAETQGRREGLLT
VLQKAGIKPKAAESFNTFVSASDNIGITVGMVENSFNWRSDSGELLFITETELLGHKVSQ
RRRRDKRSATDESAIIRNLAELTTGQPVVHLDHGVGRYIGMQTLDAGGVTTEYLCIEYAK
QAKLYVPVASLHFISRYTGGDADHAPLNSLGSDAWSKAKQKAAEKVRDVAAELLDVYARR
AAKPGFAYNIEWDEYQKFADSFPFEETPDQAQAIAAVIHDMGSPHAMDRLVCGDVGFGKT
EVAMRAAFLAANQGKQVAILVPTTLLAQQHHENFKDRFAAWPFEIEVMSRFISAKGQKET
MQRLSEGKVDIVVGTHKLLSNDIKFKDLGLLIIDEEHRFGVRQKEKLKSLRADVDILTLT
ATPIPRTLNMAMSGMRDLSIIATAPARRLSIKTFVQQRNKATIREAIMREILRGGQVYFL
HNEVDTIARTAEEIAEIVPEARIAMGHGQMRERELEGVMSDFYHQRYNVLVCTTIIETGI
DVPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAAKRLDAISK
LEDLGAGFALATHDLEIRGAGELLGDDQSGQIASIGFSLYMDMLDRAVTSLKEGKEPSLD
DAMAGHTEVELRIPALLPDDYIADVNTRLSLYKRLASCKNQDDIDEFQVECIDRFGLLPE
PAKNLVEVAEIKIKAEAIGVLKVDLSSQGGTIEFTDTTKVDPGYIIKLVQTKPNTFKFEG
SQKLRLVKQTDTAKARIAFISDIIADLAKESR
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaactcttttatctttgcctttgccgacccagaaaaaatccgcctctgtgcaa
gaccacaagcaatggggtcagttacaaggcagcagcgccgcactgtgcattactcaagca
caagcccaatacaatggccctattgtgctggtgaccgccgacactccatcggcgctaaaa
ctagaaaaagagctggcgttctttatgcctggcggcgcctctggtgataaaagcggtgaa
accaacgtacctattacagtgttccccgattgggaaaccctgccctacgattcgttttcg
ccgcatcaagatattgtctcgcagcgcttagaaaccttgtaccgcttcacccagcaggta
aatggcattttcattgtgccagtaaacacgttaatgcaacgtttggcacctaccgattac
ctcgctaagtacctgttgatgctgaacaagggagacacccttgatagagaccaattcaga
cgcaacttagaacaagcgggctatttgcacgttagccaggtgatgagccacagtgaattt
tcggtgcgcggtagtattatcgatttattccccatgggcagcgacaagccgtttcgtatt
gatttgttcgatgacgaagtagactctattcgctttttcgataccgaaacccagcgctct
ggcgatacggttgaaaaaataaagttgctaccagcacgggaattccccaccgataaagaa
tctatcacccttttccgtcagcgctttttagaaaagttcgatgcaaacaacgcctcagaa
tcggtgttttctcaagtaactaaaggcaccatgcctagtggtgtggaatattacttgccg
ttgttttttgataaaaccgctaccttattcgattacctacaccctaaaagtgtgctgtta
ttacatggtgatgtacaagatgccagcgagtttttctgggcagacattcaagagcgttac
gaacagcacagatacaacccagcaaggccattgctgccacctgaagatttatttttacca
aaaaataccttgtttggtgaaattaaacagtggccgcgggtaactttgaccaaagacgtg
attgaagaaaagccgggcagctttaacttaggctgcgacaagcttgacgacattgctatt
aacacccaaaagaaagtaccggcagaacaattaattgccacggtgaacaatgccaaaaag
cgcggtgccaaggtactgttttgcgctgaaacccaaggccgccgtgaagggctacttacc
gttttacaaaaggcgggtatcaagcctaaagcggctgaatcgttcaatacctttgttagt
gccagcgacaacatcggtattaccgtgggcatggttgaaaatagctttaactggcgaagt
gacagtggcgaactgctatttatcaccgaaaccgagctattaggtcataaggtaagccaa
cgcagacgccgagacaaacgctccgccactgacgaaagtgccattattcgtaacttggcc
gagctaaccaccggccagcccgtggtacatttagatcatggtgtaggccgttatattggc
atgcaaactcttgatgctggcggtgtaaccaccgaatacttatgcattgaatacgccaaa
caagctaagctgtatgtgcctgtagcgtcgttacactttatttctcgttataccggcggc
gatgccgatcatgcaccgcttaactcgttaggctctgatgcatggagcaaagcaaaacaa
aaagcggctgaaaaagtacgcgacgttgccgcagaactgcttgatgtatacgcccgacgc
gccgctaaacccggctttgcgtacaacattgaatgggacgaatatcaaaagttcgccgac
agcttcccgtttgaagaaacgccagaccaagcccaagccattgctgccgttattcacgac
atgggcagcccgcacgcaatggatagactggtatgtggcgacgtaggcttcggtaaaaca
gaagtggccatgcgcgcagcatttttagctgcaaaccaaggcaaacaagtcgctattttg
gtgcccaccaccctacttgcccaacagcatcacgaaaactttaaagatcgctttgccgca
tggccgtttgaaattgaagtgatgagccgctttattagcgccaagggccagaaagaaacc
atgcagcgccttagcgaaggcaaagtagacattgtagtaggtacgcacaagctattgtcg
aacgatattaaattcaaagatttaggcttgctgatcatcgatgaagagcaccgtttcggg
gttcgccaaaaagagaagctaaaatcgctgcgtgccgacgtagatattcttacccttacc
gctacgccaattcctcgaacgttgaatatggccatgtcgggcatgcgtgatttatcgata
atcgccactgcgccagcaagacgcttatcgattaaaacctttgtgcagcaacgtaacaag
gccactattcgcgaagcgataatgcgggaaattttacgtggtgggcaggtttatttcctt
cataacgaagtagataccattgccagaaccgctgaagaaattgccgaaattgtacctgaa
gcacgaattgccatgggccacggccaaatgcgcgaacgtgaactagaaggtgtgatgagc
gacttctaccaccagcgctacaacgtgttggtatgtaccaccatcattgaaaccggcatt
gatgtgccaagcgccaataccattattatggacagagccgatcatttaggccttgcccaa
ttgcaccaattgcgtggccgtgtgggtcgttcacaccaccaggcttacgcgtacttgctt
actccgcaccctaaacgcatgaccaaagatgcggcgaagcgattagacgccatatcgaaa
ttggaagacttgggtgcaggctttgcgctagcaacccacgaccttgaaattcgtggtgca
ggtgaattattaggcgacgaccaatctgggcaaattgccagcataggtttcagcctttac
atggacatgctagatagagcggtaacatcgctgaaagaaggtaaagagccttcgctagac
gatgccatggcaggccacaccgaagtagagcttcgcattcctgccctactgccagatgac
tatattgccgatgtaaacaccaggctttcgctatacaaacgcttagccagttgtaaaaat
caagacgacatagacgaattccaagtagaatgtatcgaccgctttggtttattaccagaa
ccggcgaaaaacttagtagaagtagcggaaataaaaataaaagcagaagccataggcgtg
cttaaagtagacttgtcatcacaaggcggtaccatagagtttacagataccaccaaggtt
gaccctggctatattattaagctggtacaaaccaagccaaataccttcaaatttgaaggc
agccagaaactacgattagtaaaacagactgatactgcaaaagcgcgtattgcgtttatt
agcgatatcattgccgaccttgcaaaggagtcgcgataa
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