KEGG   Alteromonas naphthalenivorans: ambt_12115
Entry
ambt_12115        CDS       T01513                                 
Symbol
ruvB
Name
(GenBank) Holliday junction DNA helicase RuvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
alt  Alteromonas naphthalenivorans
Pathway
alt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:alt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    ambt_12115 (ruvB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:alt03400]
    ambt_12115 (ruvB)
Enzymes [BR:alt01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ambt_12115 (ruvB)
DNA repair and recombination proteins [BR:alt03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     ambt_12115 (ruvB)
    RecFOR pathway proteins
     ambt_12115 (ruvB)
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 AAA_22 AAA_14 AAA_3 AAA_16 RNA_helicase Mg_chelatase nSTAND3 NTPase_1 AAA_2 Rad17 NB-ARC AAA_18 AAA_17 Bac_DnaA ABC_tran TIP49 AAA_24 NPHP3_N Sigma54_activ_2 AAA_28 ATP-synt_ab AAA_PrkA TsaE
Other DBs
NCBI-ProteinID: AEF03943
UniProt: F5ZDI1
LinkDB
Position
complement(2712501..2713505)
AA seq 334 aa
MIEADRLITPDASTEDEVIDRAIRPKMLDDYTGQPHVCEQMEIFIQAARKRDDALDHLLI
FGPPGLGKTTLANIVANEMDVSIKTTSGPVLEKAGDLAALLTNLERNDVLFIDEIHRLSP
VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR
LEFYSVKDLTTIVARSASYLNLDMSSEGAQEIARRSRGTPRIANRLLRRVRDYAEIKSDG
TVGVETAAKALDMLDVDKEGFDYMDRKLLCAIIEKFDGGPVGLDNLAAAIGEEKETIEDV
IEPFLIQQGFLQRTPRGRIVSQRAYLHFGFTPSA
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgatagaagctgacagactgattacgcctgatgcgagtaccgaagatgaagttatcgac
cgtgctattcgccccaaaatgcttgatgattacacaggccagcctcacgtatgtgagcag
atggaaatcttcattcaggcagctagaaagcgtgacgatgctctcgatcacttattaata
tttggtccgcctgggctaggtaaaactacgctagcaaatattgtggcgaacgagatggat
gtcagtattaaaaccacctcagggccggtacttgaaaaggctggtgacctagctgcattg
ctgactaaccttgaacgcaacgatgtgctttttatagatgaaattcatcgattaagccct
gtagtggaagaaattctgtatccggcgatggaagactatcaattagacatcatgataggc
gaggggcctgctgctcgttctattaagctagatttacctcccttcacactcgttggtgct
acaacgcgggcaggttcgcttacctcgccattgcgtgaccggtttgggatagttcaacga
ttagagttttattcggttaaagaccttaccaccattgtggctcgtagtgcgagttactta
aatttggatatgagttcagaaggcgctcaagaaattgcacgtcgctctagaggtacaccg
cgtattgcaaacaggctattgcgacgagttcgagattacgctgaaattaaatctgatggt
acggtaggtgttgaaaccgctgcaaaggcattggatatgctagatgtagacaaagaaggt
ttcgattacatggatcggaaattgctttgtgccattatagagaaatttgatggcggccca
gtagggctagacaacttagcagcggcaattggtgaagagaaagaaaccattgaagatgta
atagaaccctttcttattcagcaaggcttcctgcagcgtactccacgtggacgtatagtg
tcacagcgggcgtatcttcattttggcttcacgccttcagcttaa

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