Alteromonas naphthalenivorans: ambt_13635
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Entry
ambt_13635 CDS
T01513
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
alt
Alteromonas naphthalenivorans
Pathway
alt03030
DNA replication
alt03430
Mismatch repair
alt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ambt_13635
03430 Mismatch repair
ambt_13635
03440 Homologous recombination
ambt_13635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alt03032
]
ambt_13635
03400 DNA repair and recombination proteins [BR:
alt03400
]
ambt_13635
Enzymes [BR:
alt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ambt_13635
DNA replication proteins [BR:
alt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ambt_13635
DNA repair and recombination proteins [BR:
alt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ambt_13635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AEF04245
UniProt:
F5Z4I6
LinkDB
All DBs
Position
complement(3083100..3086519)
Genome browser
AA seq
1139 aa
AA seq
DB search
MMDGLNKVKPILGKVSEYNMPAVAITDQMNMCGLVKFYSGAHGLGIKPIIGTDFWVTNEA
FGDEPFRLTLLAMNNEGYKNITVLISKAYLRGHVAHRAVIDQDWLIEHAEGVIILSGAQL
GDVGVALTKNNTSLLAESLAFYKTHFPDRFYLELIRTGRPGEEDYLHRAVECAEREGLPV
VATNEVCFINKEGFDAHEIRVCIHDGYTLDDTRRPKRYSDQQYLRTSEEMVELFSDIPEA
IENTVEIAKRCNVTVRLDEYFLPQFPTGGMTTEDFLVKVSEEGLERRLAFLFPDEQVRAE
KRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNNIPVGPGRGSGAGSLVAYALDI
TDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAELYGRQAVSQIITFGTM
AAKAVVRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFAAEPRLPEVYDQDEEVKDLID
MARILEGVTRNAGKHAGGVVIAPTTITDFAPLYCDDEGNNPVTQFDKNDVETAGLVKFDF
LGLRTLTIIQWAIDMVKEGKGIDIDITSIPLADAKSFRTLLNAETTAVFQLESRGMKELI
KRLKPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDAEYQHECLQEILEPT
YGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEMAKQRGAFAEGSRNNNIDPDL
AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMSADMDNTDKIVTL
VDECSRMGLELLPPDLNAGKHKFTVDEKGRIVYGIGAIKGVGEGPIEAIIEARENQGAFK
DLFDFCAKIDIKRVNKRVLEKLVLAGALDNLGPHRAALMASLPDAIAAAGQHAKAESFGQ
SDMFGLLTTEPDEVEQAFADVPLWPEKVWLEGEKDTLGLYLTGHPINQYVEEIRHYTDGR
LVDLKPTGKEQMANAVGLVLGVRVMTNKRGRRWAIVTLDDKSARIDARFFPDTFEQYESM
LETDKILLIKGQVSFDDFSGGNTITARDVMDIVQAREKNARALALNVETQLLEPKKINQM
QSILQAFKGGSCPVHLLVTHPDAEALITCGARWFVTPEDQLLHDLKQCLGEKAVSILYH
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgggcttaataaggttaagcccatacttggcaaagtatccgagtacaacatg
cctgctgtggcgattaccgaccaaatgaatatgtgtggtttggtaaagttttattctggc
gcacatgggcttggcattaaacctattattggtaccgatttctgggtgaccaatgaagcc
ttcggcgatgagccgttccgtcttaccttgcttgcgatgaataacgagggctataagaac
attacggttcttatttctaaggcctacttgcgaggtcacgttgcgcatagagcggtaatc
gatcaagactggcttattgaacatgcagaaggcgtaatcatactctctggtgctcaactg
ggggatgttggtgttgcacttactaaaaataacaccagcttgttggcagaatcattggcc
ttctataaaacccatttcccagaccgtttttatcttgagctaattcgtactggtcgccct
ggtgaagaagattacttacatcgcgcggtagaatgtgccgagcgagaaggcttgcctgta
gtggcaaccaatgaagtgtgcttcattaataaagaaggttttgacgcgcatgaaatacga
gtatgtattcatgatggctacaccttagatgatactcgccgacctaaacgttacagcgac
cagcaatatcttcgtaccagcgaagaaatggtggagctgttcagtgatattcctgaggcc
atagaaaatacggttgaaatcgctaagcgatgcaacgttacagtacgattagacgaatac
tttttgccccagtttcctactggtggcatgaccactgaagatttcttagtcaaagtgtcg
gaagaagggcttgagcgcaggttagcgtttctgtttcctgatgaacaagtacgggcagaa
aaacgccccgagtacgacgacaggctccgtatcgagttagaagtaatcaaccaaatgggt
ttccctggctacttccttatcgtaatggagttcattcagtggagtaaggacaacaatatt
ccagtaggcccaggtcgtggttctggtgcgggctctctagtggcttacgcattagatatt
accgacctcgacccgcttgaattcgacttgctattcgaacgattccttaacccagaacgg
gtatcaatgccggatttcgatgttgatttctgtatggatagacgagatgaagttatcgac
cacgttgccgagctttatggtcgtcaggcggtatcgcagattattacctttggtaccatg
gcggcaaaagccgtggtgcgcgatgtgggccgagtactaggtcacccttacggttttgtg
gaccgtatttcaaagcttattccaccagaccctggtatgacccttgaaaaagcgtttgct
gccgagcctcgtttgcccgaagtgtacgaccaagacgaggaggttaaagatctcatcgat
atggcgcgcattttagaaggcgtaacgcgaaatgcaggtaaacacgctggtggtgtagtt
attgcgccaaccactattaccgattttgcgccgctatactgcgacgatgaaggtaataac
cctgttactcagttcgataaaaacgatgttgaaaccgcagggctagtcaagttcgacttc
cttggattacgtacgctaaccattatccagtgggccattgatatggtgaaggaagggaag
ggtattgacattgatattacctctattcctttggcggatgcaaaaagctttcgtaccctg
ctaaatgcggaaactaccgcggtgttccagttggaatcccgaggtatgaaagagctaata
aaacgtcttaagccagatagttttgaagatattatcgcattggtagccctatttagaccg
ggtcctttgcagtcgggcatggtagataactttatcgaccgtaagcatggccgtgaagct
atttcttatcccgatgctgaataccaacacgaatgtttgcaagaaattctggagcctacc
tacggcattatcttgtatcaagaacaggtaatgcagattgcgcaggaaatggcgggctat
tccctaggtggcgccgatttgttacgtcgtgctatgggtaagaaaaagccagaagaaatg
gctaagcaacgtggcgcgttcgctgaaggctcgaggaacaataacatcgacccagatttg
gcgatgaaaattttcgacttggtagaaaaattcgccggctacgggtttaacaaatctcac
tctgctgcttacgccttggtgtcttatcaaaccttatggttgaaagcccattatcctgct
gaattcatggccgcagtaatgtcggccgatatggataataccgataaaattgttaccttg
gttgatgaatgcagtcgaatgggtcttgagttattgcccccagacttaaatgcaggtaag
cataagttcaccgtcgatgaaaaaggcagaattgtttacggcattggcgccattaaaggg
gtaggtgaaggccccattgaagccattatcgaagccagagaaaaccaaggtgcgtttaaa
gatttattcgatttttgtgcaaaaattgatattaagcgcgttaataaacgggtattggaa
aaactagtacttgccggcgcgttagacaatttagggcctcacagggctgcactcatggca
tctttacctgatgctatcgcagccgcagggcagcatgccaaagcggaatcctttgggcag
tcagacatgttcggattgctaacgactgagcctgatgaagtagagcaagcttttgccgat
gttccgttgtggccagaaaaagtatggttggaaggtgaaaaagataccttaggtttatac
cttacagggcaccctattaatcaatacgtagaagaaattaggcattacactgatggaagg
ttggttgacttaaaacccacaggcaaggagcaaatggcgaatgcagttggcctagtgctt
ggggttagggtaatgaccaataaacggggaagacgctgggctattgtcacacttgatgat
aaaagcgcgcgaatagacgctcgttttttcccggataccttcgaacagtatgaatctatg
ctagaaactgacaaaatattgcttataaagggacaggtcagctttgatgatttctctggg
ggcaatacaatcaccgcccgtgatgtaatggacattgttcaagcacgggagaaaaacgcg
agagcattggcgttaaatgttgagacccagttgcttgaaccgaaaaagattaatcaaatg
caatctatcttgcaggcctttaaaggcggaagttgcccggtgcatttattagtaacccat
cctgatgctgaagcactgattacgtgcggtgcacggtggtttgttacaccagaagatcaa
cttttgcacgatctcaaacaatgtttgggagaaaaagccgtttcaatcctctaccattaa
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