Alteromonas naphthalenivorans: ambt_14040
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Entry
ambt_14040 CDS
T01513
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
alt
Alteromonas naphthalenivorans
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
alt03009
]
ambt_14040
Enzymes [BR:
alt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ambt_14040
Ribosome biogenesis [BR:
alt03009
]
Prokaryotic type
rRNA helicases
ambt_14040
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_C_2
AAA_19
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AEF04326
UniProt:
F5ZED5
LinkDB
All DBs
Position
3172685..3173929
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AA seq
414 aa
AA seq
DB search
MTFEDLELDEELCHAVADMGYESPTSVQSLVIPHAMDGRDILASAPTGTGKTAAFLLPVC
QFLLDYPRKQPGSTRILILTPTRELALQVYEQAVELTKHTDIVSGVITGGINYGTDRETL
SQSIDILVATPGRLFEHIQNEMADCRDIECLILDEADRMLDMGFRTIVNQIASEARWRKQ
NMLFSATLEGGGVSQFAKDILQNPEVIEAFPSRKEKNKIHQWYHLADDLNHKKALLVHIL
KEQATTTVVFVKTRERLQMLKDYLASQDIMVCWLQGEMPQDKRMAALTRFKSGEVPVLLA
TDVAARGIDVPEVSHVINFDMPRKADVYVHRIGRTGRAGAKGTAISLIEAHDFEFITKAA
RYTEEPIKARVISELRPQNKAPKIGPRKKKLTAKDKAKAKSKAKPKIKNRTKKR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgaagatctcgaattagacgaagaactctgccacgcggtggcggatatgggc
tacgagagccccaccagcgtacaatctttggttatccctcatgcaatggacgggcgcgac
attttagcgtctgcgcctactggcacgggtaaaaccgctgcgttcttgttaccggtttgt
cagtttttactcgactacccgcgtaaacaacccggttcaacccgtattcttattcttacc
cctacccgcgaactcgcgctgcaggtgtatgaacaagccgtagagttaaccaagcacact
gacattgttagcggtgtgatcaccggtggcattaactacggtaccgacagagaaaccctt
agccaaagcatcgatattttggtggcgactccagggcgtctattcgagcatattcaaaat
gaaatggccgattgtcgagacatcgagtgccttattcttgatgaagccgatcgcatgcta
gacatgggtttccgcactattgtgaaccagattgcgagtgaagcacgctggcgcaaacag
aacatgctattttctgccacattggaaggcggcggtgtaagtcagtttgccaaagacatt
ctacaaaatcctgaagtgattgaagcctttccatcacgcaaagaaaagaacaaaattcac
cagtggtatcacttagctgatgacttaaaccataaaaaggcattgctcgttcatatatta
aaagaacaagcgactaccacggttgtattcgttaaaacccgcgaacgcctgcaaatgctt
aaagactatttagcatcgcaagatattatggtgtgctggttacaaggcgaaatgccacaa
gataaacgtatggctgccttaacgcgctttaaaagtggcgaagtgccggtactcttagct
accgacgtagccgcgcgaggcattgatgtacctgaagttagccatgttattaacttcgat
atgccacgtaaagccgacgtttatgttcaccgaattggacgtaccggccgtgctggcgcc
aaaggcactgcgatatctttgatagaagcccacgactttgaatttatcaccaaagcagcg
cgctacaccgaagaaccaatcaaagcccgggttatttcagaacttcgtccgcaaaataaa
gcccccaaaattggcccaagaaagaaaaagctaacggcgaaagacaaagcaaaagccaag
tctaaagcgaagccaaaaattaagaatcgcacgaagaagcgctaa
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