Alteromonas naphthalenivorans: ambt_14250
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Entry
ambt_14250 CDS
T01513
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
alt
Alteromonas naphthalenivorans
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alt03400
]
ambt_14250
DNA repair and recombination proteins [BR:
alt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ambt_14250
Archaeal homologous recombinant proteins
ambt_14250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
ParD_antitoxin
ABC_tran
nSTAND3
cobW
AAA_21
SMC_N
AAA_22
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AEF04364
UniProt:
F5ZEH3
LinkDB
All DBs
Position
complement(3218874..3222545)
Genome browser
AA seq
1223 aa
AA seq
DB search
MKILTLRLKNLNALKGEWKIDFTQSPFIDNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LGTISATSNDIMTRGTSECLAEVEFDIKGKAYRAFWSMRRARGKADGNLQSADVELAEVE
SGKVLATQVRPKSEEIERLTGLNFARFTKSMMLSQGDFAAFLNANEGDRAELLEELTGTE
IYGQLSQAIHEKYKAAETTKREFKLKLEGVALLSEAQHSELSTQLNQFKTQLLTVNTEIV
SLREQLQWQQACEQNQQELTKANAALVEANNVYEQAKGELALLVAGEPAELLRLPHSALS
QLCEDVQRIANNLSLKQEQLPDLESQQQKRQAECESSETDFTNAKAHQQRFETLINEQII
PLDSEINKLTNRIETNQQTLADAKIKQGKAQENHQTYSDELEGKKRTLDELTTYLNVHAA
NGKMAGEISGWKEKAARFSDDESTLAEITKKITATQQLKDSAVADLAEKQHAKTNVVALH
QQSADNVSLCESSLNQLLSNGDTASVNADITVLNNNWPVLASCEQWQRLYINHKNSHAEK
AQRLTSLLSNIETLKQERAELAASYKATQSHLKDVESLIKLDAELAHLRQTLSQGEACPL
CGATEHDASLMNIDVPETIAKRDELTRSLENIEKLGTQKREQIITAEFEKQQCEKVIAEA
LAAFSQLEADWQGAMSSLNASVVISDVESFHQLQLNCKARQSRLNAQFSNIHASEEKLAE
AKNKTLLHQQQIESINSEMALLTAKVSQLEGQLNDFHTTKSSIESALAHNRRTLIDEIES
VGLTPDANITEWLAQKHKDVEVFQEKTHLHSTLSHELTALKDKLVEQSEIKAAADKEAQL
YTTRIQEIEAQREAQRAKRHDLFPQGDIGAARREIQHTLSVKERRYKECDTALREAQRAL
ENANAQLKILTAELEEKQQAKEAKQVEFDSALSQSPFADEAEFLSALLPYEERQRLLQRK
QLIEREQQNAQLLLNTATQKHNTLLAHEHATKWQQSTAEATQASLNEKDDEKDRLLAQQG
QLSQQLESNRQAIEKQQSLINEMRELETSYDDIAYLHSLIGSASGDKFRRFAQGLTLDNL
VRLANQQLDRLHGRYQLTRNTKDSLGLSVLDTWQGDVVRDTKTLSGGESFLVSLALALAL
SDLVSFKTSIDSLFLDEGFGTLDAETLDVALDALDNLNASGKMIGVISHIEAMKERIPTQ
LKVIKRNGVGLSALEKCYSATEN
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcttacccttaggctcaaaaatttaaatgcattaaaaggggagtggaagata
gacttcacccagtctcctttcatcgacaacggtttgtttgccattaccggcccaacaggg
gcaggaaaaactacattgcttgatgctatttgtttagcgctttatcaccaaacgccgcgc
ttgggcactatttcggcgacctcaaacgatattatgacgcgcggtacgtcagagtgcttg
gcggaagttgaattcgatataaagggtaaagcgtatcgggcattttggagtatgcggcgc
gcaagaggaaaagctgacggcaatttacaatctgctgatgtggaattagcggaagtagaa
tctggcaaagtgttagctacccaagtgaggccaaagagtgaagagatagagcgcctgact
gggcttaactttgcgcgctttacaaagtcgatgatgctctcccaaggcgactttgctgcc
tttttaaatgccaacgaaggtgacagagctgaattattagaagagcttactggtacagaa
atttatggccagttatctcaagcgattcatgaaaaatacaaggcagcagaaaccacaaaa
cgggaattcaaactaaaactggaaggcgtagcattactcagtgaagcgcagcatagcgaa
cttagtactcagctgaaccaatttaaaacccagctacttactgtaaataccgagattgtt
tcgctacgagaacagttgcaatggcaacaggcgtgtgagcaaaatcaacaagagcttact
aaggcgaacgcggcattagttgaagcaaataacgtgtatgaacaggcaaagggcgaacta
gcgctattagttgctggtgagcctgcggaattgcttcgcttgccacattccgcgcttagt
cagctatgtgaggatgtgcagcgcattgccaacaatctcagcctgaaacaagagcaattg
ccagatttagaaagccagcaacaaaagcgacaggcggaatgtgaaagcagtgagacggac
tttaccaacgcgaaagcccatcaacagcgttttgaaaccctgattaacgaacaaatcatt
ccacttgatagtgaaatcaataagcttaccaaccgcattgagacaaaccaacagacgtta
gctgatgcgaaaataaagcagggcaaagcgcaagaaaaccatcaaacatactctgatgaa
cttgaaggtaaaaagcgcacgctggatgagttaaccacctaccttaatgttcatgcggca
aatggtaagatggcaggcgaaatcagtggctggaaagaaaaagcggcacgatttagcgat
gacgaaagtactctagcggaaataaccaagaaaataaccgcaacgcagcagcttaaagac
agtgccgtggccgatttagctgagaaacaacacgccaaaactaatgtggtggcgttacat
caacaaagcgcagataacgtttcactgtgtgaatctagcctcaatcaactccttagtaat
ggtgatacagccagcgtgaatgcagatatcacagtacttaataataactggccagttctt
gcgtcgtgcgaacaatggcagcggctttatatcaatcataaaaatagccatgctgaaaag
gcgcaaagactaacgtcattgttatccaatatagaaacccttaaacaagagcgggcagag
ttagcggcaagttacaaagccacgcaaagccatttaaaagacgttgagtcgttaattaag
ttagatgccgagcttgcgcatttacgccaaacgctttcacaaggtgaggcatgccctttg
tgcggcgccactgagcacgatgcttctttgatgaatattgatgtgcctgaaaccattgcc
aagcgcgacgaactaacccgctcacttgaaaatatagagaaactaggtacgcaaaagcga
gagcaaatcattaccgccgagttcgaaaaacagcagtgcgagaaggtgatcgcagaagca
ctcgcagccttttctcaacttgaagccgactggcaaggggctatgtcgtctttaaatgct
agcgttgttatttcagatgttgagtcttttcaccagcttcagctgaactgcaaagcacgt
caatctcgcttaaacgcccagtttagcaatatacacgctagcgaggaaaaattagccgaa
gccaaaaataagacgcttttgcatcaacagcaaatagaatcaataaacagtgagatggcg
cttttaacggcaaaagtctcgcaactagaagggcaactaaacgacttccacaccactaaa
tctagtattgagagcgcacttgcccataatcgccgcacgcttattgatgagattgaaagc
gtgggtttaacaccagatgccaatatcactgagtggcttgctcagaaacacaaggatgtg
gaagtgtttcaagagaaaactcatctgcacagtaccttgtctcacgagttaacagccctt
aaagataaattggtagagcaaagtgaaattaaagcggctgcagataaagaagcccaatta
tacactacacgtattcaagaaattgaagcccagcgtgaagcgcaacgtgctaaacgtcat
gatttgttcccccaaggggatattggcgctgctagacgtgaaattcagcacaccctatcg
gtaaaagagcggcgctataaagaatgtgacactgctcttcgtgaggcgcagcgagcatta
gaaaatgctaacgcccaactaaaaatactcactgcagagttagaagaaaaacaacaagcc
aaagaagcaaagcaagtcgaattcgattccgcattaagccaaagcccgtttgctgatgaa
gccgaatttttaagtgcattattgccctatgaggaacgccagcgtttacttcaaaggaag
caattaattgaacgtgagcagcagaatgcgcagttgttattaaataccgccacgcaaaag
cacaacactttattagctcatgagcacgccacgaaatggcaacaatcgactgcagaagcg
acacaggcaagtttgaatgagaaagatgatgaaaaagatcggttactggcacaacaaggg
caactatctcaacagttagagagtaataggcaggcgattgaaaaacagcaaagcttaatc
aatgaaatgcgtgagttggaaacatcgtatgatgatattgcttatttgcactctcttatt
ggctcagccagcggcgataaatttagacgatttgcacaaggcttaacgctagataattta
gttcgtttagccaatcaacaactcgataggttgcacgggcgttaccagcttacccgcaac
acaaaagacagtttaggtttgagtgtattagacacgtggcagggcgatgtggtgcgcgat
actaaaactctatcgggaggcgaaagctttctggtgagtttagcgttagcgctggccttg
tctgatttagtgagttttaaaacgagtatagattctcttttcctcgatgagggttttggt
acgctagatgccgaaactttagatgttgctttagacgcattagataacctaaacgctagc
ggtaaaatgattggtgttattagccacatagaagcgatgaaagaacgtattcctacccag
cttaaagtaataaaacgaaatggcgttgggttaagtgcgctggaaaaatgttactcagcg
acagaaaattga
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