Alteromonas naphthalenivorans: ambt_15330
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Entry
ambt_15330 CDS
T01513
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alt
Alteromonas naphthalenivorans
Pathway
alt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ambt_15330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alt03019
]
ambt_15330
03009 Ribosome biogenesis [BR:
alt03009
]
ambt_15330
Enzymes [BR:
alt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ambt_15330
Messenger RNA biogenesis [BR:
alt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ambt_15330
Ribosome biogenesis [BR:
alt03009
]
Prokaryotic type
rRNA helicases
ambt_15330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
HEM4
AAA_19
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEF04576
UniProt:
F5Z509
LinkDB
All DBs
Position
3469498..3471264
Genome browser
AA seq
588 aa
AA seq
DB search
MTTTVDMTFKDLKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPA
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQVAPHHKLEALTRI
MEVERFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNIDIL
VATDVVARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAGRTGDAILFISHREKRMLFS
IEKTTKQPIEVMPIPSISEINETRLSRFKQSVIDATQDDSIETLIPLVEMIKEEAEASPE
VLMAALLKIAQGDEPLILKESDRPDLHSKPPRDSREPRGDRRDGGRDGRERKPRAPRTGR
KPEAGMQRFRIDVGHTHGAKPGNIVGAIANEGNMDSKHIGAIEIYDNFSTVDLPEGMPKE
TKDKLQGTRVAGQRLSIREWSDTPPAKRERGDNRGENRSRDNRARRKS
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaactgtcgacatgacatttaaagatctaaaactaccagaacctatcttacaa
gcccttgaaaaagttggctacgagaaaccgtcacctattcaagccgagagtattccatta
ctgcttgaaggtcacgacttactcggtcaggcccagacagggacaggaaaaaccgcagcg
tttgcccttccaatgttggcaaatatcgatcctgagcaacgtaagccgcaattactggta
ctagcacctactcgcgaattagcgattcaggtagcagaagcgttccaagtgtacgctagt
ttcagccataaaattaaagtactgcctgtttacggcggtcaatcttacgacaaccaaatt
cgccagcttaagcgcggcgttcaagttgtggtaggtacaccaggtcgtgttatcgaccat
atcaaacgtaaaacgttggatttaagtgaacttaaattcctcgtacttgatgaagccgac
gaaatgttacgcatgggctttattgatgacgttgagcttattttgagccacgcgccagct
gaacgccaaacggcgttgttctcggcaactatgcctggtccaattaagaaaattactcag
cgttaccttaaagatcctaagcacgtaaaaattgcttctaaggtaagtactgcaagtact
attcgtcaacgttactgccaagtagctcctcaccataagcttgaggcacttacgagaatc
atggaagtagagcgttttgacggcatgattattttcgtgcgtactaaaacagctactgtt
gaacttgctgataaactttctgcacgtggatacgatgttgaaccgctaaatggtgatatt
cctcagaacgctcgtgagcgtactgttgataaacttaagcaaggtaacattgatatcttg
gtagcaactgatgttgttgcacgtggtcttgatgttgaacgtgttagccacgttatcaac
tacgacgtaccttacgatagtgaatcttatgttcaccgtattggtcgtacaggccgtgca
ggtcgtactggtgatgcaatacttttcatctcacatcgtgaaaagcgtatgcttttctct
atcgagaaaacgactaagcagccaattgaagtaatgccaattccttcaattagtgaaatc
aacgaaacccgtttaagccgtttcaagcaatctgttattgatgctacgcaagatgacagc
attgaaacacttattccattagttgagatgattaaagaagaagctgaagcttctcctgaa
gtgcttatggcagcattgcttaagattgcacaaggtgatgagccgcttatccttaaagaa
agcgaccgccctgatcttcacagcaaaccacctcgtgacagccgtgagcctcgtggcgac
cgcagagatggtggacgtgacggtcgtgaacgtaagcctagagcacctcgcactggtcgt
aagccagaagcaggtatgcaacgcttccgtattgacgtaggtcatacacacggtgctaag
ccgggtaatatcgttggtgctatcgcaaacgaaggtaacatggattctaagcacattggt
gctattgaaatttatgataacttcagtactgttgatttgccggaaggcatgccaaaagag
actaaagacaagcttcaaggtactcgcgtagcgggtcaacgtttgtctattcgcgaatgg
tcagacacaccaccggcaaagcgtgagcgaggcgacaaccgtggtgaaaaccgcagccgt
gataatcgcgcacgtcgcaagtcgtaa
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