Alteromonas naphthalenivorans: ambt_15875
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Entry
ambt_15875 CDS
T01513
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
alt
Alteromonas naphthalenivorans
Pathway
alt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ambt_15875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alt03019
]
ambt_15875
Enzymes [BR:
alt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ambt_15875
Messenger RNA biogenesis [BR:
alt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ambt_15875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Rubella_Capsid
Motif
Other DBs
NCBI-ProteinID:
AEF04685
UniProt:
F5ZEY5
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All DBs
Position
3589135..3590442
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AA seq
435 aa
AA seq
DB search
MPTHLTDTHFSDLPINSKVVDALTAANFNNCTPIQALSLPPLLEGLDIAGQAQTGTGKTI
AFLVATFHYLLSKADNDENSNSKGPRAIIMAPTRELAVQIFNDAKLLSEHTGLSLGLIYG
GEGYQSQRETLEEGVDIIIGTTGRILDYYKQNVFTLNNIQVAVLDEADRMFDLGFIKDIR
FLFRRLPPATERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELFYPSD
DDKMLLLLSLFEEEWPDKAIVFANTKYSCERVTDWLTADGHRVGLLSGDVPQKKRLGILE
DFTKGKLDILVATDVAARGLHIDSVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAISFA
CEKYAMNLPDIEKYIQHAIPVTDYDASALLDDINAPKPRRRRTPNTRNSSRRGNGKGRGN
SGGNRGKPSNRGNSN
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgcctactcacttaactgatactcatttttccgacctgccgattaatagcaaggttgtt
gacgccttaacggcggcaaattttaataattgtacaccaatacaggcgttatctctgcct
ccgttgcttgaaggcttagatattgccggacaagctcaaacgggtacaggtaaaaccatt
gccttcttggtagctacttttcattatctgctaagcaaagcagataatgacgagaacagc
aactcaaaaggacctcgtgccatcataatggcgccaacgagagagttagccgttcagatt
ttcaacgatgccaaactgctcagtgagcataccggtttgtcgcttggattaatttatggg
ggcgaaggttaccaaagtcaacgtgaaacccttgaagaaggggtagatatcattattggt
acgacaggacgcattctggattattataaacagaacgtgtttaccttgaataatattcaa
gttgccgtacttgatgaagccgatcgcatgttcgatttaggctttattaaagatatccgc
tttttgttccgtcgcttaccgcctgctacagaacgtctaagtatgctgttttcagctaca
cttagttatcgcgttcaagaactcgcttatgagcacatgaacaacccaactcacgttcaa
gttgcgccagagcaaacgacggcgacaagggtctcgcaagagctattctacccttcagat
gatgacaagatgctgctgcttctttcgctatttgaagaagaatggcccgataaagctatt
gtgtttgctaacaccaaatacagctgtgagcgcgtgaccgactggcttaccgccgatggc
caccgtgtgggcttgttaagcggcgatgtaccacagaaaaaacgcttgggtattttggaa
gactttaccaaaggtaagctagacattttagtggctacggatgttgccgcacgtggctta
catattgattctgtcacccatgtgtttaactacgacttacctgatgatgcagaagactat
gttcaccgaattggtcgaaccggtcgcgctggtcaaagtggaatagcgataagttttgcg
tgcgaaaaatacgcgatgaacttgccagatattgaaaaatatattcaacatgctattcct
gttactgattacgatgcgagtgctttgcttgatgatataaatgcgcctaaaccaagacgc
agacgcacaccaaacacgagaaactcgtctcgacgcggcaacggtaaaggtcgtggcaac
agcggtggaaatagaggtaaaccgtctaaccgcggaaacagtaactaa
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