Alteromonas naphthalenivorans: ambt_16440
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Entry
ambt_16440 CDS
T01513
Name
(GenBank) 2,5 RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
alt
Alteromonas naphthalenivorans
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
alt03016
]
ambt_16440
Enzymes [BR:
alt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
ambt_16440
Transfer RNA biogenesis [BR:
alt03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
ambt_16440
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AEF04793
UniProt:
F5ZF16
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All DBs
Position
3713538..3714221
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AA seq
227 aa
AA seq
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MRCFIGLDLHSTEKLALDSWRQQALPEVTARNMFNLSEGRAHNEGRGNEGRRGKGKESKG
KRRDSGASQPYAVNAANYHMTLSFLGHITHRQHEALVAELDTLIHAPFSLTLDTTGIWNG
PKILFAAPQSPPAELMALAKSTRKAARAAAIEVDGKGFSPHVTVIRKATAALPVPLYTPH
VEMHASAFHLFESVSTPQGVTYPVRQSWNLKHNMSVREKLRRGINDE
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgtttcattggtttagatttacattcaacagaaaaattagcccttgatagttgg
cggcaacaagccctcccagaggtgacagcccgcaacatgttcaacctttctgagggccga
gcccacaatgaaggtagagggaacgaaggcaggcggggcaagggtaaagagagcaaaggt
aaaagacgtgactcaggcgcatcccaaccttatgcggttaacgcagccaattaccatatg
accttaagttttctcggccacattactcaccgacagcatgaggcgttagtcgccgaacta
gatacgctaatacatgcaccattttcactaaccttagacactactggtatttggaacggc
cctaagattctctttgccgcaccacaatcaccgccagcagagctcatggccttagcaaaa
tctacccgcaaggccgccagagcagcagctatagaggttgatggtaaagggttttcgccc
catgttaccgttattcgaaaagccacggcggcgcttcctgtgcctttgtatacacctcat
gtagagatgcatgcctcggcgttccacctttttgaatctgtctctacaccgcaaggggtt
acataccccgttaggcaaagttggaatttaaagcacaatatgtcagtgcgtgagaagcta
cgccgaggaattaatgatgagtag
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