Alteromonas naphthalenivorans: ambt_17505
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Entry
ambt_17505 CDS
T01513
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
alt
Alteromonas naphthalenivorans
Pathway
alt03420
Nucleotide excision repair
alt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ambt_17505
03430 Mismatch repair
ambt_17505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alt03400
]
ambt_17505
Enzymes [BR:
alt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ambt_17505
DNA repair and recombination proteins [BR:
alt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ambt_17505
MMR (mismatch excision repair)
Other MMR factors
ambt_17505
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AEF05003
UniProt:
F5ZFE7
LinkDB
All DBs
Position
3950711..3952882
Genome browser
AA seq
723 aa
AA seq
DB search
MDVSRLLDELNDKQREAVAAPLSNALILAGAGSGKTRVLVHRIAWLMEVENIAPFSILAV
TFTNKAAKEMRGRIESLMGRGLNNMWIGTFHGLAHRLLRAHHAEANLPENFQILDSDDQY
RLIKRILKAMNLDEKHWVPRQIQWYINGNKDEGLRPQHIETHNDQTQQKMREIYAAYQDA
CDRSGLVDFAELLLRAHELWAKNPEVLANYQRRFRAVLVDEFQDTNNIQYAWLRMLCSGN
QNNIMIVGDDDQSIYGWRGANVDNIQHFLKDFNNPTTIRLEQNYRSTGTILKAANTVIDN
NTGRLGKELWTDGNDGEPISVYAGFNELDEARFIVSKIKDWLNQGNALKDTAILYRNNAQ
SRVLEEALLHQGTPYRIYGGLRFFERQEIKDALGYLRMMNHPHDDAAFERVVNTPTRGMG
EKTLSQVREAARTHNCSMWQASQLLINENALKGRALNALQSFVLLVTELEQATVDEPLEK
HADVAIRQSGLYAMYQAERGEKAQARLENLEELVTACKQFTVPDEAEEMTPLSAFLAHAS
LEAGETQAGTDQDAVQMMTIHTAKGLEFPMVFMAGVEEGMFPSQMTNDEPGRMEEERRLC
YVGMTRAMEKLYITYAESRRLYGQDKYHTASRFIREIPADCVEEVRLKSTISRPIHNRFS
QATSHASFEETGFQLGQKVVHRKFGEGIVLNYEGSGEHARVQVNFDEFGTKWLVLAYAKL
EKA
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggatgtatcccgactgcttgacgagcttaacgataaacaacgtgaagcggtagcagcc
cctctttctaacgccctcatattagctggcgcaggaagtggcaaaactcgggtgttggtg
catcgcatagcatggttaatggaagtggaaaatattgccccgttttccattctggccgta
acctttacgaataaggccgcgaaagaaatgcgtggccgaatagagtcgttgatgggtcgt
ggtctgaataatatgtggattggtactttccacggattagctcacaggctgcttcgcgcc
caccatgcagaagctaatttgcctgaaaacttccaaattcttgactcagacgaccaatac
cgtttgattaaacgtattttaaaagccatgaatttagacgaaaagcactgggtgccccgt
caaattcagtggtatatcaacggcaataaagacgaaggcctgcgccctcaacatattgaa
acccacaatgaccaaacccaacaaaagatgcgtgaaatttacgccgcgtatcaagacgcg
tgcgaccgctcagggcttgtggattttgccgagctattattgcgtgcacacgaactttgg
gctaaaaacccagaagtgctcgctaattaccaacgacgtttccgcgccgtattagttgac
gaattccaagataccaacaacattcagtacgcatggctacgcatgctgtgtagcggcaat
caaaacaatatcatgattgtgggcgatgacgaccaatctatttacggctggcgtggcgcg
aatgttgataatattcagcacttcttgaaagatttcaataaccccacaaccattcgatta
gaacaaaactaccgttctaccggtaccattttgaaagccgccaacacggttattgataat
aatacgggccgtttaggcaaagagctttggacagacggcaacgatggcgagcccatctct
gtttatgcggggtttaatgagttagatgaagcccgctttattgtgtcgaaaattaaagac
tggctgaaccaaggcaatgcgttaaaagacactgccattttatatcgcaataacgcccag
tcgcgggtattagaagaagccttactgcaccaaggtacaccgtatcgcatttatggcggc
cttcgattcttcgaacgccaagaaattaaagatgcacttggctaccttcgtatgatgaat
catcctcatgacgatgccgcctttgaacgtgtagtgaacacgccaactcgcggtatgggt
gaaaaaaccctctcacaggtacgagaagccgccagaacacataattgctctatgtggcag
gctagccaactactcattaacgaaaacgcgctcaaaggccgtgcacttaatgcccttcaa
agttttgtgctgttagttaccgagcttgaacaagctactgtagacgagcctttagaaaaa
cacgccgacgtggccattaggcagtcaggcttatacgccatgtatcaagccgaacgcggc
gaaaaagcccaagcgcgactggaaaacttagaagaattggttaccgcgtgtaagcaattt
accgtacctgatgaagcagaagaaatgacgccgctttctgcctttcttgctcacgcctcg
ttagaagcaggcgaaacccaggcgggcaccgatcaagatgcggtgcagatgatgacgatt
cacaccgcaaaggggctcgaattccctatggtatttatggccggtgtcgaagaaggcatg
tttccaagccagatgaccaatgatgaaccaggcagaatggaagaagaacgccgcctgtgt
tacgtgggcatgactcgcgccatggaaaagctatatattacttacgcggaaagccgccgt
ttatacgggcaagacaaataccacaccgcatctcgctttattcgtgaaattccagctgac
tgtgttgaagaagtaagactcaagtctacaatttctcgaccgatacataaccgattcagc
caagcgacctcacacgcctcatttgaagaaactggctttcagttgggccaaaaagttgtt
caccgtaaattcggtgaagggatagtactaaactacgaaggcagtggtgaacacgctagg
gtacaagttaattttgacgaatttggtacaaaatggctcgttctcgcctatgctaaattg
gaaaaagcatag
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