Alteromonas naphthalenivorans: ambt_19045
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Entry
ambt_19045 CDS
T01513
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
alt
Alteromonas naphthalenivorans
Pathway
alt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ambt_19045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alt03021
]
ambt_19045
03400 DNA repair and recombination proteins [BR:
alt03400
]
ambt_19045
Enzymes [BR:
alt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ambt_19045
Transcription machinery [BR:
alt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ambt_19045
DNA repair and recombination proteins [BR:
alt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ambt_19045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AEF05302
UniProt:
F5Z669
LinkDB
All DBs
Position
complement(4290477..4291463)
Genome browser
AA seq
328 aa
AA seq
DB search
MGSVTEFLKPRLVEIENVSPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI
DGVLHEYSTKEGVQEDVIEILLNLKGLAVRLEGKTEATLTLVKSGAGPVVAGDIQHDGDV
EIVNPDHLVCTLTGEAEISMRIKVEMGRGYVPASTRRSSEEDDRPIGRLLVDASYSPVER
IAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRSATILAEQLDAFVDLRDVSEPEA
KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRTEVELLKTPNLGKKSLTE
IKDVLASRGLSLGMRLENWPPESIAEKD
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
gtgggttctgtgactgaattccttaaaccgagattagttgagatcgaaaacgtttctcct
actcgtgccaaagtaactttggaaccactagagcgcggctttggccacactctaggtaac
gccctacgtcgtatcttgttgtcatccatgccaggatgcgcagttactgaagtagaaatt
gatggcgttcttcacgagtacagcaccaaagaaggtgtgcaagaagacgtaattgaaatc
ttgctaaatcttaaaggtttagcggttcgccttgaaggtaaaactgaggcaaccctaact
ctagtgaaatctggcgctggccctgttgttgctggtgacattcagcatgatggcgacgta
gaaattgttaaccctgaccacttagtttgtactttaactggcgaagctgaaatcagcatg
cgcattaaagtagaaatgggtcgcggttatgtaccagcttctacccgtcgctcctctgaa
gaagatgatcgtccaattggtcgtttattagttgatgcttcatacagcccagttgagcgt
atagcttacagtgtagagtctgcccgtgttgaacaacgcacagacctagacaaattgatt
atcgatatggaaacgaacggtactttagatcctgaagaagcgatccgccgttctgcgact
atcctagctgaacagcttgatgcattcgtagatttacgtgatgtgtccgagccagaagcg
aaagaagagaagccggaatttgatccgattctacttcgcccagttgatgacctagagcta
actgtacgttctgctaactgtttaaaagcagaagctatccagtacattggtgacctggtt
cagcgtactgaggttgagctacttaaaacgccaaaccttggtaaaaaatcgctaactgaa
atcaaagatgttctagcatctcgtggactttctctaggtatgcgcctagaaaactggccg
cctgagagcatcgctgaaaaagattaa
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