Alteromonas sp. BL110: D1814_09980
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Entry
D1814_09980 CDS
T11343
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
alta Alteromonas sp. BL110
Pathway
alta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1814_09980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alta03019
]
D1814_09980
03016 Transfer RNA biogenesis [BR:
alta03016
]
D1814_09980
Enzymes [BR:
alta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D1814_09980
Messenger RNA biogenesis [BR:
alta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D1814_09980
Transfer RNA biogenesis [BR:
alta03016
]
Prokaryotic type
tRNA degradation factors
D1814_09980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
UPF0158
OB_RNR_1st
OB_Dis3
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AXT38987
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All DBs
Position
2295817..2298234
Genome browser
AA seq
805 aa
AA seq
DB search
MSDDPHYQREKEKYENPVASREYLMSLLKEHDKPLSFLDICNLVNAFDEEARIGIQRRLR
AMEREGQVQFTKQKKYILQNRDELIKGRIIGHRDGYGFLRPEDKSGDLFISAGQMNLFLH
DDVVEARISGTDRRGRKEAFVTQVIEPRSEPIVGRYFVEQGFGMVVPDDSRLQHEIVIPP
ESTNGARMGQVVVVELTQRPRRKMNPVGKIVEVLGEHMAPGMEIEMALRTFDIPHQWPKG
VTKQVEKLTDQVPDEAKEGRIDLRQLPLVTIDGEDARDFDDAVYCEPLDDGGWQLWVAIA
DVSHYVRTGSALDDEAQQRGNSVYFPDQVIPMLPEVLSNGLCSLNPEVDRLCMVCEMTIS
AQGKLEEFQFYEAVMNSHARLTYTKVWNILQGDKELHQRYEPHVPHLRNLHDLYRALKKA
RAKRGAIEFETQEVKFVFNAQRKIENIVPLVRNDAHKLIEECMIMANVSAALMLEKHEAP
ALYRVHDKPDADRLTAFTSYLSEIGIPHAIVEDAEPAAFTDVVLKTRGRVDEELIQTMLL
RSMKQAVYDGENVGHFGLALEAYAHFTSPIRRYPDLVVHRALKGIIAKQQGKKAVSGAKN
YTVEEIEQLGEQCSMTERRADDATRDVADWLKCEFMLDHVGDTFEGVVSSVTNFGLFVRL
TEYHIDGLVHITSLDDDYYHYDDVKQALVGESGHRQFRLGDTVEVSVAAVNLDERKIDLL
LDKSMLRSTKGKKVKVKTAKKSSDKPTRFDNKPRSGKDSRSDKKGNKGKGGSSASSRSGG
KSSSRSSAKGGSSGKTLSLNKRGKR
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgatccgcattatcagcgcgagaaagaaaagtacgaaaatccggtagccagc
cgcgaatatttaatgagtttattaaaagaacacgacaagcctttgtcgtttcttgatatc
tgtaatttggtgaacgctttcgatgaagaagcgcgaattggtattcagcgccgactacgt
gccatggagcgcgaagggcaggtgcaattcactaagcagaaaaagtacatacttcaaaac
cgtgatgagctcattaaaggccgaattattggccaccgagatggttacggtttcttgcgt
cctgaagacaaaagcggtgacttatttattagcgcagggcaaatgaacctgttccttcac
gacgatgtggttgaagcgcgtattagcggtaccgaccgtcgcggtagaaaagaagcgttt
gtaacgcaagtcattgagccgcgcagcgagcctattgttggtcgttattttgttgagcag
ggctttggcatggttgtgcctgatgacagccgtttgcagcatgaaattgtcattccgcca
gaaagtaccaacggtgcccgcatggggcaggtggtagtggtagagcttactcaacgtccg
cgtcgtaagatgaacccggtgggtaaaattgttgaagtacttggtgagcatatggcacca
ggtatggaaatagaaatggcgcttcgcactttcgatattccacaccagtggccgaaaggc
gtgactaaacaggttgaaaagctaaccgatcaggtgccagatgaagccaaagagggtcgt
attgatttacgccagcttccccttgttaccatagatggcgaagatgcccgcgactttgac
gatgcagtatactgcgagccgttagatgatggcggctggcaactatgggtagccatagcc
gatgtaagtcattatgtaagaacaggctcggcccttgatgatgaagcgcagcagcgcggt
aactcggtgtatttccctgaccaagttattccaatgctacctgaggtgctgtctaacgga
ttgtgttcactcaatcctgaagtagaccgcctttgcatggtgtgtgaaatgaccatcagc
gcgcaaggtaaactggaagaatttcagttttacgaagcggtaatgaattcgcacgcccgg
ttaacctacaccaaagtgtggaatattcttcaaggcgacaaagagcttcatcagcgttac
gagcctcatgtaccccaccttcgcaatttgcacgacctttatcgcgcgcttaaaaaagct
cgagctaaacgtggcgccattgagtttgaaacccaagaagtgaagttcgtatttaacgcc
caacgcaaaattgaaaatatcgtgcctttagtgcgtaacgatgcgcacaagcttattgaa
gaatgcatgatcatggcaaacgtgagtgctgctttaatgttagaaaagcacgaagcgcca
gcgttataccgagtgcacgataagccagatgccgacagacttactgctttcaccagctac
ttaagtgaaattggtatccctcatgccattgtagaagatgcagaaccagccgcctttacc
gatgtggtgcttaaaacccgtggtcgagtagacgaagaacttattcaaactatgctgctg
cgctcgatgaagcaagcggtttacgatggcgaaaacgtaggtcactttggtttggcgtta
gaagcttacgcacactttacatcacctatccgtcgctacccagacttagtggtacaccgg
gcgctaaaaggcattattgctaaacagcagggtaaaaaagcggtaagcggtgctaaaaac
tacactgttgaagaaattgagcagcttggtgagcagtgttcaatgacagagcgccgcgct
gatgacgctacccgcgatgtggccgactggctaaaatgcgagttcatgcttgatcacgtc
ggcgataccttcgaaggtgtggtgagctcggttacaaactttgggttatttgtgcgtctt
accgaataccatattgacggcttagtgcacataacatcgctagatgatgactattaccat
tacgatgatgtgaaacaagcgttggtgggtgagtcgggccatcgtcagttcagactaggc
gacacagtagaggtaagcgttgcggcagtaaaccttgatgaaagaaagattgatttatta
ctcgataagtctatgctgcgctccacaaaaggcaagaaggtaaaagtgaagacagctaaa
aagtcttcagacaaacctactcgttttgataacaagccccgctcaggtaaagactcccgt
tctgataagaaagggaacaaaggtaaaggcggctcaagcgcgtctagtcgaagcggtgga
aaatcgtcaagtcgcagcagcgcaaaaggcggtagcagcggcaaaacactgtcattgaat
aaaagaggtaagcgttaa
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