Alteromonas sp. BL110: D1814_19080
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Entry
D1814_19080 CDS
T11343
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
alta Alteromonas sp. BL110
Pathway
alta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1814_19080
Enzymes [BR:
alta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D1814_19080
Messenger RNA biogenesis [BR:
alta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D1814_19080
Ribosome biogenesis [BR:
alta03009
]
Prokaryotic type
rRNA processing factors
D1814_19080
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
AXT40639
UniProt:
A0A3A9UAL6
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All DBs
Position
4381218..4384628
Genome browser
AA seq
1136 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIVQIDKEERGQKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLDLPEGMGLIVRTAGVGKSYEEL
EWDLKVLLKHWEAISEVAEEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQA
LQHIQLVRPDFANRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMKDAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLAL
SILRILEEESIKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTP
HYQVLRRRPDDVVSESSYDVELMPAVEAETETTTTAPVKREEPALKGLVAPTAAPVVPPK
EEPAKQADDVPSLFARFGKWISDLFGSESEEETNKDKKAQSGNQNRNNRSRNNDDRRRKP
RNKNNRRGSQSKGRDQDKDQNRDGEQKDNRKARGDQRRDQNQEQRRDQRQDQDDKRNSKG
RKPRKAQQPRDEQQKPKQDQHEGEQQENQAQKKREVAERRKRRDKRRSVRVKKDDTVVNT
AEQNETQSAPAPKETPVQQKPKAPKVEKTKAPAENKSESKQDAKKPVPQAEQQVADKPVD
AKPVSAESDVTKGDSQAPVANESVEGVEATADNNTEAHNEEQGQKREGRGRSRRSPRHVR
AAGQRRKKEAQQVDDADTQAKQPGELSPQAPEVEVAATAKAEAPVVEETQAQEPGQLAPA
DEQPASNQGKQEKAKLDVEAVQDELQFDAEPSAEDKPSAEDKPSAEDNSSTTEATSAEDN
ATAKTEQAKEAQSAERASAPEETSSAVDTESTGEAIDTESASPASEAKDETTSPEQVEIN
LADAPAKAGSEAPAQDVKAAKPAAKEKRTVKAAPVSTSLAASGKGKRGASHPMALPAVVD
DTFVDVALTAKADDTRPALAVSGKTAAMSHVNSHASATTTLPQSVSDVVKDATVVE
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcaactcagcaagaagagttgcgcgttgcccttgttgat
gggcaacggttgtacgatttagatattgaaagcccagggcacgagcagaaaaaagcgaac
atctacaagggtaaaattactcgcgttgaaccaagcttagaagctgcttttgtcgactac
ggcgcagagcgccacggtttccttccactcaaagaaattgcccgcacttactttcctaaa
ggttacaaattcgaaggccgccctaacatcaaagatgtgatcaaagaaggccaagaagtt
attgttcaaattgataaagaagaacgcggtcagaaaggcgcagccttaactacattccta
tcgcttgcgggtagctatttggtgcttatgccaaacaacccacgcgctggcggtatttca
cgccgcattgaaggcgacgagcgtactgagcttaaggaatcactaagcaagttagacctt
cctgaaggtatgggcctaattgttcgtactgccggcgtaggcaagtcgtacgaagagtta
gagtgggatttaaaagtcttacttaagcattgggaagctatttcagaggtagctgaagag
cgcgaagcgcctttcctaattcaccaggaaagtaacgttattgtacgcgctattcgtgac
tacctgcgtcgcgatatcggcgagatccttatcgataaaaccagcatttacgagcaagcc
ttacagcacattcagttggttcgccctgactttgcaaaccgcgtaaagctttatcgcggt
gaagttccgttatttagccactatcaaatagaaagccaaattgagtctgcgttccagcgt
gaagtacgcttaccgtccggcggctcaattgttatcgacccaaccgaagcactaacatca
attgatatcaactctgcccgcgcaactaagggtggtgatattgaagagactgctcttaat
actaacttagaagcggcagacgagattgctcgccaattgcgtcttcgcgacttgggcggc
ttggttgttattgacttcatcgacatgacgccagtacgtcaccaacgtgaagtcgaaaac
cgcatgaaagacgcggtaagaagtgacagagcccgtgtacagcttggtcgtatttctcgc
tttggtctattggagatgtctcgccagcgtttgcgcccttctctaggtgaatcagcgcac
cacgtgtgcccgcgatgctctggtcacggcaccattcgcggtactgaatctttagcactg
tctattcttcgtattttggaagaagaaagcataaaagaaaatacagggcagattgaagca
cagctacctgttccagttgcaacttatttacttaacgaaaaacgtaaatcaattcagctt
cttgaaaagcgtcatggcgtagatttactgcttattcctaatgcaaacttagatacacct
cattaccaggtgttgcgccgacgtccggacgacgttgtgtctgaatcaagctacgacgta
gagctaatgcctgcggtagaagctgaaacagaaacgacaaccacggcgccagttaagcgc
gaagagcctgcgcttaaagggctagttgcgccaacggctgcacctgttgtaccgcctaaa
gaagagccagcaaagcaagctgacgacgtgccttcgctatttgctcgctttggcaaatgg
atcagtgatttgtttggtagcgaaagcgaagaagaaaccaataaagacaagaaagcacag
tctggtaaccaaaatagaaataaccgcagtcgcaataacgacgaccgtcgtcgtaagccg
cgcaataaaaacaatcgccgtggcagccagtctaaaggccgagaccaagataaagatcaa
aatcgtgatggcgaacagaaagacaatcgcaaagctcgcggcgatcaacgaagagatcag
aatcaagaacagcgaagagaccagcgccaggaccaagacgacaagcgcaatagcaaaggc
cgtaagccgcgtaaagcccaacaacctcgcgatgagcaacaaaagcctaagcaagatcaa
cacgaaggcgagcagcaagaaaaccaagcgcagaagaagcgtgaagtggctgaacgcaga
aaacgccgtgacaagcgccgtagcgttcgtgtgaagaaagacgacactgtcgtaaatact
gcagaacaaaacgaaacccagtcggcccctgcaccaaaagagacaccggtgcagcaaaag
cctaaagcaccgaaagtagagaaaacaaaagcgccagctgaaaataaaagcgagtctaag
caagacgctaagaagccagtgccgcaagcggaacaacaagtagctgacaaacctgttgac
gctaagccagttagtgctgaatcggatgtgactaagggtgatagtcaagctccagtagct
aacgaatcggttgaaggcgttgaagcgactgctgataacaacactgaagctcacaacgaa
gaacaaggtcaaaaacgtgaaggtcgtggccgttcgcgccgttcacctcgccatgttcgt
gcagctggtcaacgtcgcaagaaagaagcgcagcaagttgacgatgcagatactcaagct
aagcaacctggcgagctttcaccgcaagcacctgaggttgaagttgctgcgacagctaaa
gctgaagcgcctgttgttgaagaaacgcaagcacaggagcctggtcaactagcgccagcc
gacgagcagccagcatctaaccaaggcaagcaagaaaaagccaagcttgatgttgaagcc
gttcaggacgaacttcagtttgatgcagagccttcagcggaagataagccttcagcggaa
gataagccttcagcggaagataattcttctacgactgaagcaacttcagcagaagataac
gctaccgctaaaaccgaacaggctaaagaagcacaaagtgctgagcgagcaagtgcacct
gaagaaacctcgtctgcagtagacactgaatcgacaggtgaagctatcgataccgagagt
gcaagcccagcgtcagaagcaaaagatgaaacaacatcgccagaacaagttgaaattaac
ttggcagatgcacctgcaaaagcaggatctgaagctccagcgcaagatgtaaaagccgct
aagcctgctgctaaagaaaagcgcactgtgaaggcagcacctgtttcgactagcctggcc
gctagcggaaaaggcaagcgtggtgcatctcaccctatggcattgcctgcggtagtagac
gacacatttgttgatgttgcacttacagcaaaggctgacgacacacgacctgcactggca
gtatcgggtaagactgcggccatgtcgcacgtaaactcgcacgcatcagcgactacaaca
cttcctcaatcagtaagtgacgttgttaaagacgcaacagtggttgaataa
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