Alteromonas sp. B31-7: IUA53_10975
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Entry
IUA53_10975 CDS
T11045
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
altb Alteromonas sp. B31-7
Pathway
altb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
altb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IUA53_10975 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
altb03019
]
IUA53_10975 (rne)
03009 Ribosome biogenesis [BR:
altb03009
]
IUA53_10975 (rne)
Enzymes [BR:
altb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IUA53_10975 (rne)
Messenger RNA biogenesis [BR:
altb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IUA53_10975 (rne)
Ribosome biogenesis [BR:
altb03009
]
Prokaryotic type
rRNA processing factors
IUA53_10975 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QPL48463
LinkDB
All DBs
Position
2560098..2563409
Genome browser
AA seq
1103 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARTYFPKGYRFEGRPNIKDVIKEGQEVIVQIDKEERGQKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLDLPDGMGLIVRTAGVGKSFEEL
EWDLKVLLKHWDAISGVAAEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQA
LQHIQLVRPDFANRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMKDAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLAL
SILRILEEESIKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTP
HYQVQRRRPDDVVSEASYEVDLMPAVEAETETTTAAPVKREEPALKGLVAPTAAPVVAPK
EAPSKPADVPSLFSRIGKWLSDLFGSEESKEKETKEQQKPASKGHQSRQRNNDDRRRKPR
KNNRRHGQQPQNKEGGDQEQRKPRQDQDEKRNNRNRKPRKAQQPRDEQQTTKPVNKAQSQ
DNSQEPQAQKKREVAERRKRRDTRRSVRVNKDEDTQVQAKNKVPAKAKPVKAMAAEEGNE
KAPKTTKPKANESTPKQEQTQAPKKPKIDETDVIESKAQEEVTPSTPSTQDENANQTQDE
NGQKREGRGRSRRSPRHVRAAGQRRKKDAQNASEDGANVESNDTAQTQAAMPGKLESEVQ
SSGTDAPVEPQVAVESTPSNEQSEAQPQAAETPAEATSPAPEAKDVSQAPSEEDSTQADK
PGLLEPASEEAADVVQDELQFDLTSPDADANAKPAKPRVKVPVEAQATPPKQVEIDLNHD
GDSAEAPSAQESSADVAPEVVVEEKAQSSDADVADEKPVAPKSVKTSVINTSLAASSLGK
RRASHPMTLPASVDDAFTDVALVAKADDTRPAITVCGKQALMRDVVGKASAPTTLPASVD
VASQHVESAAESDEETESQAANS
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcaactcaacaagaagagttgcgagttgccctcgttgat
gggcaacgtttgtatgatttagatattgaaagcccaggacacgagcagaaaaaagccaac
atttacaagggtaaaattactcgcgtagaacctagcttagaagccgcttttgttgattat
ggtgctgagcgccatggctttctccccctcaaagaaattgcccgcacttacttccctaaa
ggttacagattcgaaggtcgtcctaacatcaaggacgttatcaaagaaggccaagaagtt
attgtccaaattgacaaagaagaacgtggccagaaaggggctgcattaaccaccttcttg
tcgttagcgggcagctacctagtattaatgccaaataacccgagagcaggcggtatttct
cgtcgtatcgaaggtgatgagcgtacagagcttaaagaatcattaagcaaacttgatctt
cctgatggcatgggcttaatcgttcgtactgcgggtgtaggcaagtcttttgaagaactt
gaatgggatcttaaagtgctattgaagcactgggatgccatttctggtgtggcagctgag
cgtgaagctcccttccttattcaccaagaaagtaatgttattgtccgtgctattcgtgac
tacttacgtcgcgacattggcgaaatccttatcgacaaaaccagcatatatgaacaagca
ttacagcacattcaattggtacgtcctgacttcgcaaaccgcgtaaaactttaccgtggc
gaagttccattgttcagtcactaccaaattgaaagccaaatagaatcggcatttcaacgt
gaagttcgcttaccgtcaggtggctcaattgttattgatcctaccgaagcactcacctca
attgatatcaactctgcccgcgccacaaaaggcggagatattgaagaaactgcgctgaat
accaacttagaagcagcagacgaaattgcacgtcagctacgcctacgtgatttaggtggc
ttggtggttatcgactttatcgatatgacaccggtaagacaccagcgtgaagttgagaac
cggatgaaagatgcagtacgaagtgaccgtgctcgtgttcaattaggccgtatctctcgc
tttggcttattagaaatgtcacgccaacgcttacgtccttcattgggcgagtcggcacac
catgtgtgtcctcgttgctcaggtcacggcactattcgtggtactgaatctcttgcgctt
tctatcctacgtattcttgaagaagaaagcatcaaagaaaacacggggcaaattgaagcg
cagcttccggtccctgttgccacgtacctgctaaacgaaaagcgtaagtctatccagtta
ctagagaagcgccacggtgtagatttattacttatccctaacgcaaatctagacacgcca
cactatcaagttcagcgccgtcgccctgatgacgtggtgtcagaagcgagctacgaagtt
gatcttatgcctgcggtagaagcagaaacagagaccacaacagccgccccagttaaacga
gaagagcctgcccttaaaggtttagttgcccccactgcggcacctgttgttgcgcctaaa
gaggcaccatcgaagcctgcagatgtaccttctttgttctctcgtattggtaaatggtta
agcgacctctttggtagcgaagaaagcaaagagaaagaaaccaaggaacagcaaaaaccg
gcaagcaaagggcaccagtcacgtcagcgtaataacgatgacagacgtcgtaagcctcgg
aaaaataaccgtcgtcatggtcagcaaccacaaaacaaagaaggtggtgatcaggaacaa
cgtaagccacgtcaagatcaagacgagaaacgtaacaaccgcaatcgcaaaccgcgtaag
gcgcagcagccccgtgatgagcaacagaccactaagccggtaaataaagcacaaagccaa
gacaacagccaagaaccgcaagcgcagaaaaagcgtgaagttgctgaacgtcgtaagcgt
cgtgatacacgccgcagtgttcgagtgaataaagacgaagatactcaagttcaagctaag
aacaaggtgcccgctaaagcgaagcctgtgaaagcaatggcggctgaggaaggcaacgaa
aaagcgcctaaaacaaccaagccaaaagcgaatgagtcaacccctaagcaagaacagact
caagcgcctaagaagccgaaaatagatgagaccgacgttattgaatctaaggcgcaagaa
gaggtaacgccttctacacctagcacacaagacgaaaatgctaaccagactcaggatgaa
aatggtcagaaacgagaaggcagaggccgctcacgtcgttcacctcgtcatgttcgtgca
gcaggacaacgtcgtaagaaggatgcgcaaaacgcatcagaagacggcgccaatgtagag
tctaacgataccgcgcaaacccaagcagcaatgcccggtaagttagaatcagaggttcag
tcttcaggaacagacgcgcctgttgagccgcaagtcgctgttgagtctacgccaagcaat
gaacaaagcgaagcgcaacctcaagccgctgaaacgccagcagaagctacgtcgccagcg
ccagaagcgaaagacgtaagccaagcgccaagtgaagaagactcgacgcaagcagataag
cccggtttgctagagcctgcaagcgaagaagccgctgatgttgtgcaagacgaacttcag
ttcgatcttacttctccagatgctgatgccaatgctaagccagcgaagcctcgggttaaa
gtgcctgtagaagcgcaagcaacgccacctaagcaagttgaaatagatttgaatcatgat
ggcgatagcgctgaagcaccaagcgcgcaagaaagcagtgctgatgtggccccagaggtg
gttgtggaagaaaaagctcaaagcagtgatgctgacgttgccgacgaaaagccggtagcc
cctaagtcggtgaagacatcggttatcaacacgagtttggcggcaagtagcttaggtaaa
cgtagggcatctcaccctatgacattaccggcttcggttgatgatgcatttactgatgtg
gcactagtggcaaaagctgatgatacacgtcctgccatcacggtatgtggcaaacaagcg
ctaatgcgtgatgttgttggaaaggcatctgcccctaccacgttgccggcaagcgtagat
gtagcctctcaacatgttgagtcagcagctgaaagtgacgaagagactgagtctcaagcc
gctaacagctaa
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