Alteromonas sp. B31-7: IUA53_11095
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Entry
IUA53_11095 CDS
T11045
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
altb Alteromonas sp. B31-7
Brite
KEGG Orthology (KO) [BR:
altb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
altb03019
]
IUA53_11095 (hrpA)
Enzymes [BR:
altb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IUA53_11095 (hrpA)
Messenger RNA biogenesis [BR:
altb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IUA53_11095 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
NACHT
ResIII
T2SSE
WHD_HA2
nSTAND_NTPase5
nSTAND3
SLFN-g3_helicase
SRP54
NTPase_1
AAA_25
ABC_tran
RsgA_GTPase
HH_YknX
Motif
Other DBs
NCBI-ProteinID:
QPL48481
LinkDB
All DBs
Position
complement(2586828..2590751)
Genome browser
AA seq
1307 aa
AA seq
DB search
MSAPIAIKPLYEQLDNCLINDKFRLKRRIQQLAKQIKDKGDKSANSAGDERLAAEHEKLL
ADLQKSLSACELRQQNLPEVSYPPLPVSDKKDDIKAAIAAHQVVIVAGETGSGKTTQLPK
ICLELGRGVKGMIAHTQPRRLAARSVATRIAEELNTPLGEKVGFKIRFSDQVSERSYVKL
MTDGMLLAEMQQDRFLNQYDTIIIDEAHERSLNIDFLLGYLKQLLAKRPDLKLIITSATI
DPQRFSRHFNRAPVIEVSGRTYPVEIRYHDPDEANNDGDQSDAIVKAVDELMGEAPGDIL
VFLSGERDIRDTQDALSRQQYRNTEIVPLYARLSAAEQNRIFQSHTGRRIVLATNVAETS
LTVPGIKYVIDPGTARISRYSARSKVQRLPIEPISQASANQRAGRCGRVSDGICIRLYSE
QDYLGRPAFTDPEILRTNLASVILQMLALGLGDIAAFPFVQPPDNRNINDGFRLLEEIQA
IGKSKGRMQLTKLGRQIARLPIDPRYARMVVEAERTNALQEVMVIAAGLSIQDPRERPQD
KRQQADEKHAEYADKDSDFISLLNVWNGFREQQNALSQNQLRKWCKQQFINYLRMREWQD
IVSQLKKSIAELGFGIVKQEADYQSIHQAIASGLLSHLGFKDKDREYLGSRNTRFMIFPG
SGLAKSQPKWVMAAELVETSKLFARMVAKIDPTWIEPLAEHVTQSSFSEPHWSKKRGAVI
AFEKVTLFGLPIVMKRAKVYSQIDPPVCHDLFIREALVEGNTKLNFAFLKDNQALLAQAD
EFEQKTRRRDLIVDDEELVSFYASRIPTDANNEAGFKKWFKLKGSNDALTFSEDDVYKQQ
PGQAIENAFPDVWRQGNITLPLRYHFEPNAEDDGVTVLIPLPVLNQVEEVGFDWQVPGLR
HDRIVAMIRSLPKRLRRNFVPAPNFADACMADMSETDKNGRPISLVEAVTHKLRKMTGIT
IDEEEWNFAALDKHLIMHFAVVDDDGNVIAKNDTLHELKQACAGQVKQTFEKAATPELER
NDLVEWDFDRLPTTFVQKVGGFEVQAFPALVERGDKVDIALIDEQEKAQALHRKGVNVLI
KNAMPSPLNYLQSKLPNKAKLGLYFNPFGQIKALVDDCIFAGIDALVGDYTQQHQTDVRS
KADFDACVDEVRANINDRVLHIATQVEKGLTLAHQCQKQMKGNVPLTMINALGDCKAHLA
SLVFPGFVSSIGEARLDDWNRYITGLSRRLEKLPIDPNKDRMHQMTIEKATAEWEKACAK
YPKGKVPQRLLDVRWMIEELRVSLFAQQLGTAYPISAKRISLFLADF
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgcacccattgcgattaaaccgctctacgaacaactggataactgcttaattaac
gataaattcaggcttaagcgtcgaattcagcaattagcgaagcagataaaagacaagggt
gataaatcggcaaatagcgcgggggatgagcggcttgccgcagagcatgaaaaattgctc
gcagaccttcaaaagtcgttgtcagcgtgtgaacttcgccaacaaaatttaccagaagta
agctatccgccgctgccggtgagtgacaaaaaagacgatattaaggccgccattgccgcg
caccaggtggtgattgtggcgggtgaaaccggctcgggtaaaaccacccagttgcctaaa
atatgccttgagttagggcggggcgtgaagggcatgattgcccatacacaaccacggcga
ctggctgcgcgcagcgtagccacacgtattgctgaagagttgaacacaccgttaggtgaa
aaagtagggtttaaaatccgatttagcgatcaggtgagtgaacgtagctacgtgaaactc
atgacggatggaatgttgctcgctgaaatgcaacaagacaggtttttaaatcaatatgac
accattattattgatgaagcccacgagcgcagcctaaacattgatttcttgcttggttac
ttgaaacaactattggcgaagcgccccgatttaaagcttattattacctcagcgactatc
gatccgcagcgcttttctcggcactttaatcgtgcccctgtaattgaagttagtggccga
acttaccccgttgaaattcgctatcatgaccccgacgaagcgaataatgatggcgatcaa
agtgatgccatcgttaaagcggttgatgagcttatgggcgaagcgcctggggatattctg
gtgtttctgagtggagagcgcgacattcgcgatacccaagatgccttaagccgccaacaa
tatcgaaataccgaaatagtgcccctgtacgcaagattgtcagcggcggaacaaaaccga
atttttcaatcccatacgggcaggcgcattgttctagcaaccaacgttgcggaaacctcg
ctgacagtaccgggtattaaatatgtcatcgacccagggactgctcgtatttctcgttat
agcgcgagaagtaaagtacagcgcttgccaattgaacccatttcacaagcttcagccaac
caaagggcagggcgatgcggtcgtgtgtctgatggtatttgtattcgtttatacagtgaa
caggattatttagggcgtccagcttttactgacccagaaattctgcgtactaatttggcg
tcggttattctgcaaatgttggcgttggggttaggtgatattgccgcgtttccttttgta
cagccacctgacaatagaaacattaacgatggctttaggttgcttgaagaaattcaagcc
attggaaaaagcaaaggccgcatgcagcttactaagttggggcgtcagattgcccgcctt
cctattgacccccgttatgcgcgtatggtggtagaagcagagcgtaccaatgcactgcaa
gaggttatggttattgcggcaggcttgtccattcaagacccacgagagcgtccacaagat
aaacgccagcaagccgacgaaaagcatgccgaatacgccgacaaagactcagactttatc
agtctccttaacgtatggaacggctttagagaacaacaaaatgcccttagccaaaatcaa
ttacgaaaatggtgtaaacagcagtttatcaattatttgcgtatgcgcgaatggcaagac
attgtaagccaattaaagaaatccattgctgagttaggctttggcattgttaaacaagag
gccgactaccagtctattcatcaggccattgccagcggtttattgtctcacttaggcttt
aaagataaagacagagagtacttaggttctcgcaatacccgctttatgattttccccggt
tcagggttagcaaagtcacaacccaagtgggtcatggctgcggagttagtcgaaacgtca
aaattgttcgcccgtatggtcgcgaaaattgatcctacgtggatagagcccttggcggaa
catgtgacgcaatctagcttctctgagccccattggtcgaaaaaacgcggggcggtaatc
gcgtttgagaaggttaccctgtttggtttacccattgtcatgaaacgggccaaagtgtat
agccaaattgacccaccagtgtgtcacgacttatttattcgcgaagccttggtagaaggt
aataccaaattaaattttgcctttcttaaggacaaccaagcgcttctagcacaagcggat
gaatttgagcaaaagacccgtcgcagggatttaatcgttgatgatgaggagctagttagc
ttctacgcctcacgaattcctaccgatgccaataacgaggccgggttcaaaaagtggttt
aagctgaaaggaagcaatgatgcgctgacctttagtgaagacgacgtttacaagcagcag
ccaggccaggcgattgaaaacgcgtttcctgatgtttggcgtcagggcaatattacctta
cctttgcgctatcacttcgaaccgaacgctgaggatgatggggtgacggtgcttatacct
ttgcccgtgttgaatcaagtagaagaggtaggcttcgattggcaggttcctgggttacgc
catgaccgcattgtggccatgattcgttcactgccaaagcgtttacgtcgtaattttgtg
cctgccccgaattttgccgatgcttgcatggccgatatgagtgaaaccgataaaaacggg
cgtcctatatcgctagtggaagcagtaacgcataagcttcgtaaaatgaccggtataacc
attgatgaagaagagtggaattttgctgcgctagataagcatttaatcatgcattttgcg
gtggtggatgatgatggcaatgtgattgctaaaaacgacactttgcatgagttgaaacaa
gcttgtgcggggcaagttaagcaaacctttgaaaaagcagccaccccagagttagagcga
aatgacttggtggaatgggattttgatcgcttacccaccacttttgtgcaaaaggtaggc
ggctttgaggttcaggcattcccagcattagttgagcgcggggacaaagttgatattgcg
ctgattgatgaacaagaaaaagcgcaggcattgcatcgaaagggggtcaatgttctgatt
aaaaacgccatgccttcgccgttaaattatttgcaaagcaaactgccaaataaagcgaag
ctgggtttgtatttcaatccttttgggcaaataaaagcgttagttgatgactgcatcttt
gccggtattgatgcgttggtaggcgactatacgcagcagcatcaaactgacgtgcgaagc
aaagccgactttgacgcatgtgtggatgaagtcagagcaaatataaacgacagggtactg
catattgccactcaggttgaaaaagggttaacccttgctcatcaatgccaaaagcaaatg
aaagggaatgtgccgcttactatgattaatgcattgggtgattgtaaggcgcacctcgcg
tctttggttttccctggtttcgtctcatccattggtgaagcaaggcttgatgattggaat
cgatacataacagggctttcccgtcgtttggaaaagctgcctatcgatccgaataaagat
cgcatgcaccaaatgaccattgaaaaagccacggctgaatgggaaaaagcgtgcgctaaa
tatccaaaagggaaggttcctcaaaggctgctggacgtgcgctggatgatagaggaattg
cgtgtgtcgttatttgcgcagcaattaggaacggcataccccatttcggcaaaacgaatt
tcactttttttggctgacttttaa
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