Alteromonas sp. B31-7: IUA53_16730
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Entry
IUA53_16730 CDS
T11045
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
altb Alteromonas sp. B31-7
Pathway
altb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
altb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IUA53_16730 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
altb03021
]
IUA53_16730 (rpoD)
Transcription machinery [BR:
altb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IUA53_16730 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Acidic_SOMP
TMEM120A-B
Wheel
SQS_PSY
EXOC6_Sec15_N
Motif
Other DBs
NCBI-ProteinID:
QPL49459
LinkDB
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Position
3832550..3834379
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AA seq
609 aa
AA seq
DB search
MAQSKQSQIKLLIAKGKEQGYLTFAEVNDHLPQDIVDSDQIEDIIRMINDMGIQVSESAP
DSDELLMQEATADEDAAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTREGEIEIA
KRIEDGINQVQCSVAEYPEAITYLLDQWDLYEAEEIRLSDIISGFVDPDDDQDLAPTATH
IGSELSEEELEDEDDDDDDDDEEEDTGVDPELARARFDELREQYIKARDVIEKKGRSHPA
AREQIAALSDIFKEFRLVPKQFDRMVKNMRAMMDKVRIQERLVMKFCVVNAKMPKKDFIK
AFAGNETSSAWLHEAVKSGAPYADALAYNQEEIERCISKMNQVEQETGLVIADIKDINRR
MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELS
ERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIIQPLDSATGGSLKDAT
QEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS
EQLRSFLDE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaagcaagcagtctcagattaagctcctgattgcaaaaggtaaagagcaaggt
tacttaacctttgcagaagttaacgaccacctgccgcaagatatcgtcgattctgatcaa
atcgaagatattatccgtatgatcaatgacatgggtattcaggtatcagaatctgctcca
gattctgacgagttactcatgcaagaagctaccgccgatgaagatgctgcagaagcagca
gcccaagcgctagctaccgttgaaagtgaaataggccgaactaccgaccctgtgcgcatg
tacatgcgtgaaatgggcaccgttgaactgttgacccgtgaaggcgaaattgaaattgcc
aagcgtattgaagatggtatcaaccaagttcagtgttcagtggcggaatatcccgaggct
atcacctacctacttgatcaatgggatctttatgaagcagaggaaattcgtctaagcgat
attatttctggttttgttgatcctgacgatgatcaagatctagcgcccacggccacccac
atcgggtcagaattatctgaagaagaattggaagatgaagacgacgacgatgatgatgac
gatgaagaagaagacacaggtgtagatcctgaacttgctcgcgctaggtttgacgaattg
cgtgaacagtatattaaagcccgtgatgttattgaaaagaaaggccgttctcatcctgcc
gcacgtgaacaaattgcagcactaagcgatatttttaaagaattccgattagtacctaag
caatttgaccgcatggttaaaaacatgcgtgccatgatggacaaggttagaattcaagaa
cgtttggtaatgaaattttgcgttgttaacgcaaaaatgcctaaaaaggactttattaaa
gcgtttgctggaaacgaaacatcatcagcgtggttacacgaagccgtgaagtctggtgcg
ccttatgctgacgcacttgcctacaaccaagaagagattgaacgctgtattagcaaaatg
aaccaggttgaacaagaaacgggtttagtgattgctgatatcaaagacattaaccgtcgc
atgtcgattggtgaagcaaaagctcgccgagcgaaaaaagagatggttgaagccaaccta
cgtttggttatttcaattgctaagaaatacactaaccgtggtttgcagttccttgacctt
attcaggaaggtaacatcggcctgatgaaggcggtagataagtttgaatatcgtcgtggt
tataagttttcaacgtatgcgacatggtggattcgtcaagcgattacccgctctattgcc
gaccaagcacgtacaatacgtattcctgtacacatgatagaaacgattaacaaacttaat
cgtatttctcgtcaaatgctgcaagaaatgggtcgcgagccaacaccagaggaattgtcg
gaacgcatgcttatgcctgaagataaaatccgcaaagtgttgaagattgctaaagagcct
atctccatggaaacgcctattggcgacgatgaagattcgcatcttggggactttattgag
gacagcactattatacagcccctcgattcagccacaggcggcagcttgaaagacgccacg
caagaagtattagcaggccttaccgctcgtgaagcgaaagtacttcgcatgcgttttggt
attgatatgaatactgaccatacgctagaggaagttggcaagcagtttgacgttacccgt
gagcgtattcgtcagattgaagctaaagcgcttcgcaaacttcgtcaccctagccgctct
gagcagcttcgtagcttcttggatgaatag
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