Alteromonas sp. B31-7: IUA53_18120
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Entry
IUA53_18120 CDS
T11045
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
altb Alteromonas sp. B31-7
Brite
KEGG Orthology (KO) [BR:
altb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
altb03019
]
IUA53_18120 (hrpB)
Enzymes [BR:
altb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IUA53_18120 (hrpB)
Messenger RNA biogenesis [BR:
altb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IUA53_18120 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QPL49716
UniProt:
A0A7T0RLG9
LinkDB
All DBs
Position
complement(4139692..4142253)
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AA seq
853 aa
AA seq
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MLQPLSHLPAFSLVEPLLQAIVNQNMIIGAPPGGGKSTVLPLSLLNTHIKGKILLMQPRR
VVVRNLAQYMAGVLGEQVGDTVGYRIRGENKVSASTRLEIITEGILSRMIQSDPELDGVA
VIIFDEFHERSIHSDFGLALALEVQAGLRDDLRLMIMSATLDTAPIASLLAQHSPVPTAE
LASEGRSFPVTVNYTKEVLAHEVIPHCVEVIMNAVTNHQGDILVFLSGAGAIHAVASRLS
AHQQQNDYIIHTLYSAMGKQAQQAAIAPDPQGQRKVILATNIAETSLTIEGVKVVIDSLW
ENSAEFHPSSGLTQLTQTRISKASAIQRTGRAGRVSEGVCYRLSAKESFERFAEHSAPQI
LREDVAPLLLETLNWGTHFSNLAMLTQPSKAQSAIAIKALEEIGAVNEKGDLTAYGRVLA
QIPCHPQLAHLLLFAKQNISAVAQFSDAQKHAIKTAAPFIVALAQAQLQSEHVLISDALL
HFTPAQRNDITKQAKRYAQFVGLSEQALDLSALDDEALGLCIAIAFPRQVAFKTSASYKL
AGGKGADISLVNPPQWIAVLQGQHIGNSVKIRLAQPIAEAHLKALYPNQFTSSPKVQFNK
ESQVMEARKVTSFYAIELASSPLSKSERADDPQFYLQETASAWLRYLDALPLKQWPLSQA
NWRWWYRVKLAAQLNLPQPQAYDTPDPWPTSLSELLTQAREQLAQSLGTCKNLQSLHGLG
WSKILTSALSWPQQDALSQSLPDSVVIPTGRKVSLDFRENGDVVLSVKMQELYGLSSPYV
VADGKVKITYELLSPAGRPLQTTKDIVGFWQGSYKEVQKEMKGRYPKHFWPDDPANAIPT
TKTKKAMDRQAAK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaacccttatctcatttacccgcgttttccttggttgagccccttctgcaagcc
attgttaatcagaatatgattattggtgcgccgccgggggggggtaaatccacggtgctg
cccttatccttattaaatacccacatcaaaggcaaaattttactcatgcagccacggcgt
gtggtggtgcgtaacttggcgcaatacatggctggtgtattaggtgaacaagtgggtgac
accgttggttatcgcatacggggggaaaataaggtgtcggccagtacccgactggaaatt
attaccgaagggattttatctcgcatgatccaaagcgaccctgagcttgatggggtggcg
gtgattattttcgatgaatttcacgaacgcagcattcacagcgactttggtttagcccta
gcgttggaggtgcaagcaggattgcgtgacgacttacgcttaatgattatgtctgccaca
ttagacaccgcgcctattgcgtcgctgcttgcccagcatagcccagttcctactgcagaa
ttggctagcgaaggccgcagttttccagtcacggtgaactacaccaaagaggtgttggcg
cacgaggttattcctcattgtgttgaagtcattatgaacgctgtgacaaatcatcagggg
gatatcttggtgtttctgtccggtgccggtgctatacacgccgtcgcgtctcgcttatcg
gcgcatcagcagcaaaacgactatattattcataccctttacagcgccatgggtaaacaa
gcccaacaagcggctattgctcccgaccctcaaggacagcgtaaagtgattctggctacc
aatattgccgaaaccagcttaaccattgaaggcgtaaaggtagtgatagacagcttatgg
gagaattcggcagaatttcaccccagcagcggtttaacccaattaacccaaactcgtatt
tcaaaagcctctgccattcaacgaaccggccgcgctggacgtgtaagtgaaggggtgtgc
tacaggttaagtgcaaaggaaagctttgagcgctttgccgagcatagtgcgccgcaaatt
ttacgtgaagacgtagcgccgttattattagaaacgctgaattggggtacccatttttca
aacctcgccatgctaactcagccttcaaaggcgcaaagtgccattgccataaaggcgcta
gaggaaattggcgcagtgaatgaaaaaggggatttaacggcttatggacgagtgctagcg
cagataccttgccacccccagcttgcccatttattgctgtttgcaaaacaaaatatcagt
gcggtagcacaattcagcgacgcacaaaaacacgcaataaaaaccgccgcgccttttatc
gtggcactagcccaagcgcaacttcaaagtgaacatgtgttgattagcgatgcgttgttg
cacttcacgcccgctcagcgcaacgacatcaccaaacaagccaaacgctatgcgcaattc
gtggggctcagtgagcaggcattagacttaagcgcgttagatgatgaggcgttggggctg
tgtattgccatagcctttcccaggcaggtggcgtttaaaacgtctgcctcgtataaatta
gcgggggggaaaggcgccgatataagccttgttaacccgccgcaatggatagcggtattg
caagggcagcatatcggtaacagcgtaaaaattcgattggcgcagcccattgcagaggcg
cacctaaaagcgctttaccctaatcaatttacctcatcgcccaaggtgcaatttaataaa
gagtcccaggtgatggaagcaaggaaggtgacctctttttatgccatagaattagcctcg
tcgcccttatcgaaaagtgaaagagcggatgacccccagttttacttacaggaaaccgcc
tcggcatggttgcgttacttagatgcattgccgttgaagcaatggcctttatcacaggcc
aattggcgctggtggtatagagtgaagctggcggcacagctaaatttgccgcagcctcaa
gcctacgatacgcctgacccgtggcctacatccttaagcgaattacttactcaggcacga
gagcaattggcacagtctctgggcacctgcaagaacttacagtcgttacatgggctggga
tggagcaaaatattaaccagtgcgttaagctggcctcagcaagatgcccttagccaaagc
ttgcctgacagcgtagttattcccacggggcgcaaagtcagtttagatttccgcgaaaat
ggggatgtggtgctatccgtcaaaatgcaggagctatacgggctatctagcccttatgtg
gttgccgatggcaaggtgaaaattacctatgaattattgtcacctgcgggcaggccactg
caaaccacgaaagacattgtgggtttttggcagggcagttataaagaagtgcaaaaagaa
atgaaagggcgatatccaaaacatttttggccggatgaccctgccaacgccatacccacc
actaaaacgaaaaaggcaatggatagacaagccgctaagtaa
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