Alteromonas sp. D210916BOD_24: D210916_12130
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Entry
D210916_12130 CDS
T11344
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
altd Alteromonas sp. D210916BOD_24
Pathway
altd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
altd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
D210916_12130 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
altd03400
]
D210916_12130 (recD)
Enzymes [BR:
altd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
D210916_12130 (recD)
DNA repair and recombination proteins [BR:
altd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D210916_12130 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
NAT10_TcmA_helicase
AAA_22
UvrD-helicase
SH3_13
SLFN-g3_helicase
PhoH
AAA_12
ResIII
UvrD_C
RecD_N
AAA_16
DEAD
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
BFT30037
LinkDB
All DBs
Position
1419730..1421757
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AA seq
675 aa
AA seq
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MNNKEMLVAQTLETFAEIEVIDKCIAQEFSPLDELTNEEAVIWAGVLAYLSFMQRNGHSC
LHLPHIASSHCFNGGSADKAKHGSQCADHVESTDIGELDPLKTNMVLEGIVFPPLTPLLK
IVKKALENDVVAALFVYHNGKLYSRRYYEFEQEVAQNIVKRTTFEPLTSSATEKLKALWP
RIFPTDTAELPDWQQVAVAKSLVQRFSVINGGPGTGKTYTVLRLLLALQACDDNLNIVLA
APTGKAQQRMTESILSNIEGLRGAVDDSVLDRVPTQAVTIHRLLGLREYSVTTRYNRQNP
LDLDVLIVDEASMVDLALMTRITRALPEHARLYFIGDADQLPAVELGNVLEQLVDDDEDS
PHSLGTERPSMLGAVPANMRQHVATLCPHLPLLPANERAKSWVSTLQAPQRFKGQVANVA
TAIQQGNVDSAFKAMSQEAIASAGEKQTETALTTGVKRWDENNVSTSQLLQLAKLSYGSI
FDAGSVDEAFAQLNKVRWLTPVRQGAFGVESLNGLVFNAIKQKIRRREGQFYQGQPIMIV
KNHHPLRLSNGEVGIIWPDHEGKLYAWFEEKEGQLRRISLSRIPQFETVYAMTIHKSQGS
EFEHVVLLLPRPETEKAAGLFHRGLVYTGLTRAREGCLIIANSTTFAEMVKRIDRRFSGL
SEAISHYAEVASIPR
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgaataataaggaaatgttagttgcacaaacactggaaaccttcgctgaaattgaagtc
attgataaatgtatcgcacaagaattttcaccactggatgaactgaccaacgaagaagcc
gtaatctgggcgggcgtactggcgtatctgtcattcatgcagagaaatggccacagttgt
ttacacctgccgcatattgccagttcgcactgtttcaatggaggctcagccgataaggcc
aagcatggctcacaatgtgcagatcacgtagaaagcacagatatcggcgaactcgacccc
ttgaaaacaaacatggttctggaaggtatcgtgtttccgccgctgacccctttacttaaa
attgtaaaaaaagccttagaaaatgacgtagtggcagcactatttgtataccacaacggc
aaactttacagtcgtcgttattacgagtttgagcaagaggtcgcgcaaaacatagtcaaa
cgaaccacctttgaaccccttacaagtagtgctaccgaaaagcttaaggcgctttggccg
cgtattttccccaccgataccgctgaactaccagattggcagcaagtcgcagtggcgaaa
agcttagtgcagcgttttagcgtgattaacggcgggccgggtaccggaaaaacctatacg
gttttacggcttctacttgcacttcaggcctgtgatgacaatttgaatattgtccttgcg
gcgcctacaggcaaagcacaacaacgcatgacagagtctattttaagcaatattgaaggc
ttacggggtgccgtcgacgatagtgtattagaccgcgtgcccacgcaggctgtcactatc
catcgcttattaggactgcgagaatattctgtcacgacccgatataaccgtcaaaatccg
ttagatttagatgtattgatagtggatgaagccagtatggtggacttggcgctgatgacc
cgtattacgcgcgcgttgcctgagcatgcgcgactctattttataggtgatgctgatcag
ttgccggcagtagaactggggaatgtgttggaacaactggtggacgatgatgaagatagc
ccgcacagtttgggtacagaaaggccgtcgatgttaggtgctgtgccagccaatatgcgc
cagcatgtcgccactttgtgcccgcatctcccattgctacccgcgaatgagcgagcaaaa
tcctgggtgtctacccttcaggctccgcagcgatttaaagggcaagtcgccaacgtcgca
acggcaattcaacagggcaatgttgattctgcgtttaaggcaatgtcacaggaagcaatt
gcgagcgctggtgaaaagcagactgaaactgcactgaccacaggggtaaagcgttgggat
gagaataatgtcagtacgtcgcagttattacagttagccaaattaagctatggttctata
ttcgacgctggcagtgtcgatgaagcatttgcacaactaaataaagtgcgatggctaaca
ccagtgcgccagggagcattcggcgttgaaagcttaaacgggttggtgttcaacgccata
aaacaaaaaatacgtcgtcgggaagggcagttttatcaagggcaacccatcatgattgtt
aaaaatcaccaccctctgcgtctttcaaacggtgaagtgggcataatttggcccgatcac
gaagggaagttgtacgcgtggtttgaagagaaagagggacaattgcgacgtatttcactg
tctcgtatcccacaatttgaaacggtctacgccatgaccattcacaaatcacagggctca
gagtttgagcatgtggtgttattgttgcctcgccctgaaacggagaaagccgcaggttta
ttccatcgggggttggtgtacaccggcctgactcgtgccagagaaggatgtttaatcatt
gctaattcaacgacgtttgcagaaatggtcaagcggatagaccgacgcttctcagggtta
tcagaagccatatctcattatgcagaagtagcatcaataccaaggtaa
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