Alteromonas sp. D210916BOD_24: D210916_25700
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Entry
D210916_25700 CDS
T11344
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
altd Alteromonas sp. D210916BOD_24
Pathway
altd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
altd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D210916_25700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
altd03019
]
D210916_25700
Enzymes [BR:
altd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D210916_25700
Messenger RNA biogenesis [BR:
altd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D210916_25700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
AAA_22
HI1480
Motif
Other DBs
NCBI-ProteinID:
BFT31394
LinkDB
All DBs
Position
complement(3020242..3021627)
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AA seq
461 aa
AA seq
DB search
MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEILKGRDVLAAAQTGTGKTAGFGLPIL
QRLMTGNKVAGNQVRALILTPTRELAAQVEESIRHFSEFLPLTTAVVFGGVGINPQMMKL
RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKKVLKLLPEKKQ
SLLFSATFSPDITALAKTITHEPVSISTTPANTTVETVEQHMVTIDKSKKTTALICLIKQ
KKWEQVLVFSRTKHGANRIAEKLTRAKIPSAAIHGNKSQGARTKALADFKSGAIKVLVAT
DIAARGIDISELPIVVNLDLPNTPADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIET
LIQKLVPRETLDGFEPQVAVPVTTLSKPKKPKKPKKPKVSQEGNEKTATNGKRSPKPSKN
TQESKRREGANKSRRSKPRRHANGNNSPRRNSVSGAKKSND
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacccaattagggctagctgaaccgttgctaaaagcaattgaaaaacggggt
tttagtacaccttcaccgattcaggaaaaggcgatccctgaaatattaaagggccgagac
gtgttggcggcagcacaaaccggaacaggaaaaacggcagggtttggtttgcctatttta
cagcgtttgatgacagggaataaggtagcaggtaatcaagtacgtgcgttaatactcacc
cccacacgtgaattggctgcccaggttgaggagagcattcgccattttagtgaattcctt
ccgcttacgacagcagttgtattcggtggtgtaggcattaatccgcaaatgatgaaactc
agaaaaggggtggatgtactgattgctacacctggtcgattactcgatttatatcaacag
aacgcggtgaagttttcacagctagaagtactggtgcttgatgaagctgacagaatgttg
gatatgggctttatccacgacattaaaaaggtgcttaagttgttgccagagaaaaaacaa
agcctattgttttcagcgacattttccccagacataaccgcattggctaaaaccatcact
catgagccggtaagtatttcaaccacacctgccaataccactgttgagacagtggaacaa
cacatggtgactattgataagtctaaaaaaaccacagcgcttatttgtcttatcaagcag
aaaaaatgggagcaggtgttagtatttagccgaaccaaacacggcgctaaccgaattgca
gaaaagttaacacgcgcgaaaattcccagtgctgccatccatggtaacaaaagtcaggga
gcacgaaccaaagctttggcagactttaaatcaggcgctataaaggtgttggttgccact
gatattgctgccagagggattgatattagtgagctacccattgtggttaaccttgattta
ccgaatacgccagccgattatgttcatcgcattggtaggacaggaagagcgggggcaagt
ggacaggcgtggtcgtttgtttgtgcagaagagttacaaaatctcaaggacatagaaacg
cttatacagaaactggtaccaagagaaaccttagatggtttcgagccacaggtagcggtc
cctgttaccactttgtctaaacccaaaaagccgaaaaagcccaagaagcctaaagtgtct
caagagggaaatgaaaaaacggcgacgaatgggaaacgatctcctaagccgtctaaaaac
acgcaagaaagcaagcgtagagagggggcgaacaaatccagacgttctaagccccgtcgt
catgctaatggcaataattcaccgagaagaaattctgttagcggtgcaaaaaagtcaaac
gactga
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