Alteromonas sp. 76-1: ALT761_00211
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Entry
ALT761_00211 CDS
T10165
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
alte Alteromonas sp. 76-1
Pathway
alte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALT761_00211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alte03019
]
ALT761_00211
03400 DNA repair and recombination proteins [BR:
alte03400
]
ALT761_00211
Enzymes [BR:
alte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ALT761_00211
Messenger RNA biogenesis [BR:
alte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ALT761_00211
DNA repair and recombination proteins [BR:
alte03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ALT761_00211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CRS1_YhbY
GARS_N
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
VEL95260
UniProt:
A0A3S5BXG1
LinkDB
All DBs
Position
cAlt76:complement(260205..262070)
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AA seq
621 aa
AA seq
DB search
MEKRVKSPAMTTVIADTTISSPVPDALTPENVLKNVFGYDEFREGQGDVIHHVCNGGDAL
VLLPTGGGKSMCYQIPALIRAGTGIVVSPLISLMQDQVEQLKALGVKAAYLNSTLSQEDQ
ASISEQMVSNQLDLLYVSPERLLQFGFQQTLRTTEVALFAIDEAHCVSHWGHDFRHDYRA
LGQIKARFPDIPVIGLTATADIATQSDILTQLQLNDPLVYKGSFDRPNIRYRVMSKYKAF
EQVVTYVKQQEGSGIIYCNSRAKVDDLHAKLFKQGFRCAAYHAGMDADERELVQRQFLND
KIDIVVATVAFGMGINKSNVRYVVHHDVPRSVESYYQETGRAGRDCLESEAMLLFDEKDA
ARVRQWIEQGEQADRNAIELQKFAAMEAFSEAQTCRRQVLLNYFSQFSDSACGNCDICLD
PPTMIDGLVISQKVLSCILRLSQQASTQYLIDVLRGKQLKRLQEAGHHQLSTYGIGKDKS
DSYWHNMINQLIHKGLIRVDITANAALRLTEAARPVLKGEVAVQLAVPRLEFKPDKKAKQ
APANYDRTLFMRLKHLRKVLAEENEVPPYVVFSDATLVDMAAKLPTTRDTMLDVSGVGQT
KLSRYGDAFMQLINDYIHREQ
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacgcgtaaaatcccccgccatgactactgtaattgccgacaccactattagt
tctcccgttcccgatgcgctaacccctgaaaacgttttaaaaaatgtgttcgggtacgat
gaatttcgcgagggacaaggagacgtcatccaccatgtatgcaacggtggagatgcactt
gtattgctacctaccggtggtggaaaatctatgtgctatcaaattccagcgcttatccgc
gcaggtactggcattgtggtgtcgccacttatctcgttgatgcaagatcaagtagaacag
ttaaaagccttgggtgtgaaagccgcttacctaaattcaacacttagtcaggaagaccaa
gccagtatttcagagcaaatggtgtctaaccagttagatttattgtatgtctcccctgag
cgattgcttcaatttggctttcagcaaacgcttcgtactacagaggtagccttgtttgct
atcgatgaagcccactgcgtatcccattgggggcacgatttcaggcacgactaccgcgca
ctcggccagattaaagcccgctttcctgatattcctgttattgggttaaccgccacggcc
gatatcgctacccagagcgatattcttacccaactgcaacttaatgacccgctagtttat
aaaggcagtttcgatagaccgaatattcgttatcgggtgatgtcgaagtacaaggccttc
gagcaggttgttacctacgttaagcaacaagaaggcagcgggattatttattgtaatagt
cgcgccaaagtagacgacttacacgccaagctattcaaacaaggttttcgctgcgcggcg
taccatgcgggtatggatgccgatgaacgagaattagttcagcgccaatttttgaacgat
aaaattgatattgttgtggccacggtcgccttcggtatggggattaataaatcgaacgtg
cgttacgtggtgcatcacgatgtacctcgaagtgttgaaagttactaccaagaaactggg
cgcgctggacgagattgccttgagtctgaagccatgctgctgttcgatgaaaaagatgcg
gctcgggtacgtcagtggattgagcaaggtgagcaggccgatagaaacgccatcgaactg
caaaagtttgcggccatggaggccttttctgaagcgcaaacctgccgccgacaagtgcta
cttaactacttctcacaatttagtgatagtgcttgtggtaactgtgacatttgtttagat
ccacccaccatgattgacggcttggtcattagccaaaaagtactgtcttgtattctcagg
ctttcacagcaagcttctacgcaataccttattgatgtactgcgcggcaaacaactgaag
cgcttgcaagaagccgggcaccaccagctttcaacttatggcattggcaaagacaaatct
gacagctattggcacaacatgattaaccagcttatccataaggggttgatacgggttgat
attaccgccaacgctgcgcttcgcttgactgaagctgcccgccctgtattaaaaggcgaa
gtggccgtacagctagcggtacctagattagagttcaagccagataaaaaggcgaaacaa
gcaccggctaactacgaccgcaccttatttatgcgcttaaagcacttacgtaaagtgctg
gcagaagaaaacgaagtgccgccgtatgtggtattcagtgatgccacattggtagatatg
gccgctaagctcccgaccacacgcgatactatgctagatgtaagcggcgtagggcaaacc
aagctatcacgctacggcgacgcttttatgcagctgataaacgattacattcatcgcgag
cagtag
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