Alteromonas sp. 76-1: ALT761_00606
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Entry
ALT761_00606 CDS
T10165
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alte Alteromonas sp. 76-1
Pathway
alte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALT761_00606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alte03019
]
ALT761_00606
03009 Ribosome biogenesis [BR:
alte03009
]
ALT761_00606
Enzymes [BR:
alte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ALT761_00606
Messenger RNA biogenesis [BR:
alte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ALT761_00606
Ribosome biogenesis [BR:
alte03009
]
Prokaryotic type
rRNA helicases
ALT761_00606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_30
AAA_19
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VEL95651
UniProt:
A0A3S5CST2
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All DBs
Position
cAlt76:complement(696623..698389)
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AA seq
588 aa
AA seq
DB search
MTTTVDMTFKDLKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPA
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQVAPHHKLEALTRI
MEVERFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNIDIL
VATDVVARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAGRTGDAILFISHREKRMLFS
IEKTTKQPIEVMPIPSISEINETRLSRFKQSVIEATQDDSIETLIPLVEMIKEEAEASPE
VLMAALLKIAQGDEPLILKESDRPDLHSKPPRDSREPRGDRRDGGRDGRERKPRAPRTGR
KPEAGMQRFRIDVGHTHGAKPGNIVGAIANEGNMDSKHIGAIEIYDNFSTVDLPEGMPKE
TKDKLQGTRVAGQRLSIREWSDTPPAKRERGDNRGENRSRDNRARRKS
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaactgtcgacatgacatttaaagatctaaaactaccagaacctatcttacaa
gcccttgaaaaagttggctacgagaaaccgtcacctattcaagccgagagtattccatta
ctgcttgaaggtcacgacttactcggtcaggcccagacagggacaggaaaaaccgcagcg
tttgcccttccaatgttggcaaatatcgatcctgagcaacgtaagccgcaattactggta
ctagcacctactcgcgaattagcgattcaggtagcagaagcgttccaagtgtacgctagt
ttcagccataaaattaaagtactgcctgtttacggcggtcaatcttacgacaaccaaatt
cgccagcttaagcgcggcgttcaagttgtggtaggtacaccaggtcgtgttatcgaccat
atcaaacgtaaaacgttggatttaagtgaacttaaattcctcgtacttgatgaagccgac
gaaatgctacgcatgggctttattgatgacgttgagcttattttgagccacgcgccagct
gaacgccaaacggcgttgttctcggcaactatgcctggtccaattaagaaaattactcag
cgttaccttaaagatcctaagcacgtaaaaattgcttctaaggtaagtactgcaagtact
attcgtcaacgttactgccaagtagcacctcatcataagcttgaggcactgacgcgaatc
atggaagtagagcgttttgacggcatgattattttcgtgcgtactaaaacagcgactgtt
gaacttgctgataaactttctgcacgtggatacgatgttgaaccgctaaatggtgatatt
cctcagaacgctcgtgagcgtactgttgataaacttaagcaaggtaacattgatatcttg
gtagcaactgatgttgttgcacgtggtcttgatgttgaacgtgttagccacgttatcaac
tacgacgtaccttacgatagtgaatcttatgttcaccgtattggtcgtacaggccgtgca
ggtcgtactggtgatgcaatacttttcatctcacatcgtgaaaagcgtatgcttttctct
atcgagaaaacgactaagcagccaattgaagtaatgccaattccttcaattagtgaaatc
aacgaaacccgtttaagccgtttcaagcaatctgttattgaagctacgcaagatgacagc
attgaaacacttattccattagttgagatgattaaagaagaagctgaagcttctcctgaa
gtgctaatggcagcattgcttaagattgcacaaggtgatgagccgcttatccttaaagaa
agcgaccgccctgatcttcacagcaaaccacctcgtgacagccgtgagcctcgtggcgac
cgcagagatggtggacgtgacggtcgtgaacgtaagcctagagcacctcgcactggtcgt
aagccagaagcaggtatgcaacgcttccgtattgacgtaggtcatactcacggtgctaag
ccgggtaatatcgttggtgctatcgcaaacgaaggtaacatggattctaagcacattggt
gctattgaaatttatgataacttcagtactgttgatttgcctgaaggcatgccaaaagag
actaaagacaagcttcaaggtactcgcgtagcgggtcaacgtttgtctattcgcgaatgg
tcagacacaccaccggcaaagcgtgagcgaggcgacaaccgtggtgaaaaccgcagccgc
gataatcgcgcacgtcgcaagtcgtaa
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