Alteromonas sp. 76-1: ALT761_01571
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Entry
ALT761_01571 CDS
T10165
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alte Alteromonas sp. 76-1
Pathway
alte03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ALT761_01571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alte03400
]
ALT761_01571
Enzymes [BR:
alte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ALT761_01571
DNA repair and recombination proteins [BR:
alte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ALT761_01571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
AAA_30
SecA_DEAD
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
VEL96583
UniProt:
A0A3S5FHQ4
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All DBs
Position
cAlt76:complement(1813390..1816908)
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AA seq
1172 aa
AA seq
DB search
MTATLLSLPLPTQKKSASVQDHKQWGQLQGSSAALCITQAQAQYNGPIVLVTADTPSALK
LEKELAFFMPGGASGDKSGETNVPITVFPDWETLPYDSFSPHQDIVSQRLETLYRFTQQV
NGIFIVPVNTLMQRLAPTDYLAKYLLMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEF
SVRGSIIDLFPMGSDKPFRIDLFDDEVDSIRFFDTETQRSGDAVEKIKLLPAREFPTDKE
SITLFRQRFLEKFDANNASESVFSQVTKGTMPSGVEYYLPLFFDKTATLFDYLHPKSVLL
LHGDVQDASEFFWADIQERYEQHRYNPARPLLPPEDLFLPINTLFGEIKQWPRVTLTKDV
IEEKPGSFNLGCDKLDDIAINTQKKVPAEQLIATVNNAKKRGAKVLFCAETQGRREGLLT
VLQKAGIKPKAAESFNTFVSASDTIGITVGMVENSFNWRSDSGELLFITETELLGHKVSQ
RRRRDKRSATDESAIIRNLAELTTGQPVVHLDHGVGRYIGMQTLDAGGVTTEYLCIEYAK
QAKLYVPVASLHFISRYTGGDADHAPLNSLGSDAWSKAKQKAAEKVRDVAAELLDVYARR
AAKPGFAYNIEWDEYQKFADSFPFEETPDQAQAIAAVIHDMGSPHAMDRLVCGDVGFGKT
EVAMRAAFLAANQGKQVAILVPTTLLAQQHHENFKDRFAAWPFEIEVMSRFISAKGQKET
MQRLSEGKVDIVVGTHKLLSNDIKFKDLGLLIIDEEHRFGVRQKEKLKSLRADVDILTLT
ATPIPRTLNMAMSGMRDLSIIATAPARRLSIKTFVQQRNKATIREAIMREILRGGQVYFL
HNEVDTIARTAEEIAEIVPEARIAMGHGQMRERELEGVMSDFYHQRYNVLVCTTIIETGI
DVPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAAKRLDAISK
LEDLGAGFALATHDLEIRGAGELLGDDQSGQIASIGFSLYMDMLDRAVTSLKEGKEPSLD
DAMADHTEVELRIPALLPDDYIADVNTRLSLYKRLASCKNQDDIDEFQVECIDRFGLLPE
PAKNLVEVAEIKIKAEAIGVLKVDLSSQGGTIEFTDTTKVDPGYIIKLVQTKPNTFKFEG
SQKLRLVKQTDTAKARIAFISDIIADLAKESR
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaactcttttatctttgcctttgccgacccagaaaaaatccgcctctgtgcaa
gaccacaagcaatggggtcagttacaaggcagcagcgccgcactgtgcattactcaagca
caagcccaatacaatggccctattgtgctggtgaccgccgacactccatcggcgctaaaa
ctagaaaaagagctggcgttctttatgcctggcggcgcctctggtgataaaagcggtgaa
accaacgtccctattacagtgttccccgattgggaaaccctgccctacgattcgttttcg
ccgcatcaagatattgtctcgcagcgtttagaaaccttataccgcttcacccagcaggta
aatggcattttcattgtgccggtgaatacgttaatgcaacgtttggcacctaccgattac
ctcgctaaatacttgttgatgctgaacaagggagacacccttgatagagaccaattcagg
cgaaacctagaacaagcgggctatttgcacgttagtcaggtgatgagccacagtgaattt
tcggtgcgcggtagtattatcgatttattccccatgggcagcgacaagccgtttcgtatt
gatttgttcgatgacgaagtagactctattcgctttttcgataccgaaacccagcgctct
ggcgatgcggttgaaaaaataaagttgctaccagcacgggaattccctaccgataaagaa
tctatcacccttttccgtcagcgctttttagaaaagttcgatgccaacaacgcctcagag
tcggtgttttctcaagtaactaaaggcaccatgcctagtggtgttgaatattacttgccg
ttgttttttgataaaaccgctaccttattcgattacctgcaccctaaaagtgtgttgttg
ttacacggtgatgtacaagatgccagcgagtttttctgggcagacattcaagaacgttac
gaacagcacagatacaacccagcaaggccattgctgccacctgaagatttattcttacca
atcaataccttgtttggtgaaattaaacagtggccgcgggtaactttgaccaaagacgtg
attgaagaaaagccgggcagctttaacttaggctgcgacaagcttgacgacattgctata
aacacccaaaagaaagtacccgcagaacaattaattgccacggtgaacaatgccaaaaag
cgcggtgccaaggtactgttttgcgctgaaacccaaggccgccgtgaagggctacttacc
gttttacaaaaggcgggcattaagcctaaagcggcggaatcgttcaatacctttgttagt
gccagcgacaccatcggtattaccgtgggcatggttgaaaatagcttcaactggcgaagt
gacagtggcgaactgctatttatcaccgaaaccgagctattaggtcataaggttagccaa
cgtagacgccgagacaaacgctccgccactgacgaaagtgccattattcgtaacttggcc
gagcttaccaccggccaacccgtggtacatttagatcatggtgtaggccgttatattggc
atgcaaaccctagacgctggcggcgttaccaccgaatacttatgcattgaatacgctaaa
caggccaagctttatgtacctgtcgcgtcgttacactttatttctcgttataccggcggc
gatgccgatcatgcaccgcttaactcgttaggttcagatgcatggagcaaagcaaaacaa
aaagcggctgaaaaagtacgcgacgttgccgctgaactgcttgatgtatacgcacgtcgt
gccgctaaacctggctttgcgtacaatattgagtgggacgaatatcaaaaatttgccgac
agcttcccgtttgaagaaacgccagaccaagcccaagccattgctgccgttattcacgac
atgggcagcccgcacgctatggacagactggtatgtggcgacgtaggcttcggtaaaacc
gaagtggccatgcgcgcagcatttttagctgcaaaccaaggcaaacaagtggctattttg
gtgcccaccaccctacttgcccaacagcatcatgaaaactttaaagatcgctttgccgca
tggccgtttgaaattgaagtgatgagccgctttattagcgccaagggccagaaagaaacc
atgcagcgccttagcgaaggcaaagtagacattgtagtaggtacgcacaagctattgtcg
aacgatattaaattcaaagatttaggcttgctgatcatcgatgaagagcaccgtttcggg
gttcgacaaaaagagaagctaaaatcgcttcgcgccgacgtagatattcttacccttacc
gctacgccaattcctcgtacattgaatatggccatgtcgggcatgcgtgatttatcgata
atcgccactgcgccagcaagacgcttatcgattaaaacctttgtacagcagcgtaataag
gccactattcgtgaagccataatgcgtgaaattttacgtggtgggcaggtgtacttcctt
cataacgaagtagataccattgccagaaccgctgaagaaattgccgaaattgtacctgaa
gcacgtattgccatgggtcacggccaaatgcgcgaacgtgaacttgaaggtgtgatgagc
gacttctaccaccagcgctacaacgtactggtgtgtaccaccattattgaaaccggtatt
gatgtgccaagcgccaataccattattatggacagagccgatcatttaggccttgcccaa
ttgcaccaattgcgtggtcgtgtgggtcgctcacaccaccaggcttacgcgtatttatta
acaccgcaccctaaacgcatgaccaaagatgcggcgaaacgattagatgctatatcgaaa
ttggaagatttgggtgcaggctttgcgctagccacccacgaccttgaaattcgtggtgca
ggtgaattattaggcgacgaccaatctgggcaaattgccagcataggtttcagcctttac
atggacatgctagatagagcggtaacatcgctgaaagaaggtaaagagccttcgctagac
gatgccatggcagaccacaccgaagtagagcttcgcattcctgcactactgccagatgac
tatattgccgatgtaaacaccaggctttcgttatataaacgcttagccagctgtaaaaac
caagacgacatagacgaattccaagtagaatgtatcgaccgctttggtttgttaccagaa
ccggcgaaaaacttagtagaagtagcggaaataaaaataaaagcagaagccataggcgtg
cttaaagtagacttgtcatcacaaggcggtaccatagagtttacagataccaccaaggtt
gaccctggctatattattaagctggtacaaaccaagccaaataccttcaaatttgaaggc
agccagaaactacgattagtaaaacagactgatactgcaaaagcgcgtattgcgtttatt
agcgatatcattgccgaccttgcaaaggagtcgcgataa
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