Alteromonas sp. 76-1: ALT761_03427
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Entry
ALT761_03427 CDS
T10165
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
alte Alteromonas sp. 76-1
Pathway
alte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALT761_03427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alte03019
]
ALT761_03427
Enzymes [BR:
alte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ALT761_03427
Messenger RNA biogenesis [BR:
alte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ALT761_03427
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
AAA_22
CMS1
P-loop_SecA
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
VEL98409
LinkDB
All DBs
Position
cAlt76:complement(3960869..3962260)
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AA seq
463 aa
AA seq
DB search
MSFSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLL
HRLLDGRPAASNCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKAL
RSGVDVLIATPGRLLDLYQQNAVKFSQLETLVLDEADRMLDMGFIHDIKRILKLLPTKRQ
TLLFSATFSSEITTLAQTITNNPEKVSTAPANTTVETVQQHLVPIDKSKKTAALISLIKQ
NGWKQVLVFSRTKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGEIDVLVAT
DIAARGIDINELPIVINIDLPNTPADYVHRIGRTGRAGASGQAWSFVSIDELDQLKDIET
LIQQLLPRQIIEGFEPQAKVPETTLSAPKKPNKPKRPRQSQGGNGNGNSQGDRPARRSGS
RNGPRGQGRPGGSGKPGGSGKPGGSGRSNAGKPSSRRAPTSKA
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctgagttgggcctagctgccccgctactacaagctattgaaaaacaaggc
tatacaacgccttcgcccattcagcagcaagctattcccattattcttgaaggcaaagac
atactggcagcagcgcaaacaggtacaggtaaaacagcaggcttttctttgcctttgcta
caccgtttattggacggcagacccgctgcatctaattgtgttcgcgcacttattttaacg
ccaacccgtgaacttgcggcgcaggtggaagaaaacgtaaaatcgtttagtgagtttttg
ccacttaaaaccgccgtggtattcggtggtgtgggtattaacccgcaaatgaaagcgcta
cgctcaggtgttgatgtacttatcgccacccctggccgcttgctcgacctataccaacaa
aacgcggttaagttcagccaacttgaaaccttggtgttagatgaagccgatagaatgcta
gacatgggcttcatccatgacataaaacgtattcttaaattgttgccgactaagcgacaa
accttattgttctcagcgactttctcttctgaaataaccacgctggcgcaaacgattacg
aacaatcctgagaaagtgtctacggcacctgctaatactactgttgaaacagttcagcag
catttagtgcctatcgacaagtctaagaaaacagcggccttaattagcctaattaagcaa
aatggttggaagcaggtgttagtgtttagcagaactaagcatggcgctaaccgtattgca
gacaaactgagtagagcgcgtattccaagtgcagcaatccatggcaataaaagccaaggt
gcgcgtacaaaggcgctgtctgagtttaaaagtggtgaaattgatgtgctggtagcgact
gatattgctgctcgcggtatcgacatcaacgagctacctattgttattaatatcgactta
ccaaacacgcctgctgactatgtgcatcgaattggcagaacgggtagagctggggccagt
ggtcaagcttggtctttcgttagtattgatgagctagatcaacttaaagatatcgaaact
cttattcaacaattacttccgcgccaaattattgaaggttttgagcctcaagctaaggta
cctgaaaccacattgtcagcgcctaaaaagccaaacaagcctaagcgcccgcgtcaatct
caaggtggcaatggtaatggtaatagccaaggtgatagaccagcacgtcgttcaggtagc
cgaaatggtccaagaggacagggtaggccaggtggctctggtaagcctggcggttcagga
aagccgggaggctcaggtcgctctaacgctggcaaacctagctcgcgcagagcacctacg
agtaaagcttaa
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