Alteromonas sp. 76-1: ALT761_03744
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Entry
ALT761_03744 CDS
T10165
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
alte Alteromonas sp. 76-1
Pathway
alte03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alte00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ALT761_03744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alte03021
]
ALT761_03744
03400 DNA repair and recombination proteins [BR:
alte03400
]
ALT761_03744
Enzymes [BR:
alte01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ALT761_03744
Transcription machinery [BR:
alte03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ALT761_03744
DNA repair and recombination proteins [BR:
alte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ALT761_03744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
VEL98710
LinkDB
All DBs
Position
cAlt76:complement(4327477..4331643)
Genome browser
AA seq
1388 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLNEEDYLDALEEHGDEFDAKM
GAEAVFDLLKVLDVDADVASMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKLVEREAPEVWDVLDDVIREHP
VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDKVNGLGEAMVFTSPNEAEKAYRTG
NAELHSRVKVRITEYDIDEDGVKTEKVTLTDTTVGRAIFSLMLPKGLPFEIINQAMGKKQ
ISRLLNACYRTLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPAAKKDIIDAAEAE
VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKTDIVINRDGEEEEQTSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFGGVQMTPLIEGGDVVEPLRERVL
GRVVAEDVVKPGTTEVLVERNVLLDEALVDMLEANSVDQIQVRSVITCDNDFGVCANCYG
RDLARGHMVGSGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGSLKL
HNEKSVRNSDGKVVIVSRSTELTVIDEQGREKERYKVPYGAVLSVDDGATIAAGDVVANW
DPHSHPIVTERAAKISFADIDDSNTEMQQDELTGLTRIVVKDLAKSNSKEPKLILESDEF
GLQEIRLPSFTTIEAKEGKVANEGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEVSGTIGFGKETKGKKRLVITPPEGDAYEEMIPKWRQLNVFEGEKVERGEVIADGPE
SPHDILRLRGISAVANYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCVITHSGDTQFL
EGEQVEVSNVKVTNREVEKHGKIPAQYETQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRAQRRKEEIEEMSVSAADAEQALTEAL
NAGDDSAE
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaagcaacaaaacaagactgaagaattcgataatatt
cgaatcggtcttgcttcacctgacatgattcgttcatggtcttttggtgaagttaagaag
ccagaaacaattaactaccgtacgttcaaaccagaacgtgacggcctgttttgtgcgcgt
attttcggaccagttaaagactacgaatgtctttgtggtaagtataagcgtctgaagcac
cgtggtgttatctgtgaaaaatgtggtgttgaagtaaccctaactaaagtacgtcgtgag
cgtatgggtcacattgaactggcaagcccagttgcacacatttggttccttaaatcactt
ccgtctcgtatcggcttaatgcttgatatgacacttcgtgatattgaacgtgtactatat
tttgaatcttacgtagtaaccgagccgggtatgactacccttgagcgcagccaacttctt
aacgaagaagattacttggatgcacttgaagagcacggtgacgagtttgacgcaaaaatg
ggtgctgaagccgtatttgaccttttaaaagtgttagatgtagatgctgacgtagcttct
atgcgtgaagagttgccttcaatcaactctgaaactaagcgtaagaaaatcaccaagcgt
cttaagttgcttgaatcattccaacagtctggcaacaagccagagtggatgatcttgact
gtacttccagtacttccgccggatcttcgtccgttggtaccactggatggtggtcgattt
gcaacgtctgacctgaacgatttataccgtcgtgttatcaaccgtaacaaccgtcttaag
cgtcttctagaccttgcggcgcctgacattatcgtacgtaacgaaaaacgtatgcttcag
gaagcggtagatgcattactagataacggtcgtcgtggtcgcgctatcacaggttctaac
aaacgtcctcttaaatcacttgccgatatgattaaaggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgttgactactctggtcgttctgtaattaccgttggtcctaca
ttacgtcttcaccaatgtggtcttcctaagaaaatggcacttgagttattcaagccgttt
atctatggaaaacttgaaggtcgtggtctagcaacaactatcaaagcagcgaagaagctg
gttgaacgtgaagcaccagaggtatgggacgtactagatgacgttatccgtgaacaccct
gttatgcttaaccgtgcaccaacacttcaccgtttgggtatccaggcatttgaaccaacc
cttatcgaaggtaaagcgattcagcttcacccactagtatgtgcggcctacaacgccgat
ttcgatggtgaccaaatggctgtacacgtgccgctgactattgaagctcagcttgaagca
cgtgcgttgatgatgtcgaccaacaacattctgtcacctgcaaatggtgaacctatcatc
gttccttcacaggacgttgtattaggtctttattacctaacccgtgacaaagtgaacggt
ttgggtgaggcaatggtatttaccagcccgaatgaagcagaaaaagcataccgcacaggt
aacgcagaacttcactcacgcgttaaagtacgtatcactgaatacgacattgacgaagat
ggtgtgaagactgagaaagtaacgctaacagatactactgttggtcgtgcaattttctca
ttgatgctacctaaaggtttgccgtttgaaattatcaaccaggcaatgggcaaaaagcag
atttcacgtttgcttaacgcttgttaccgtacactgggtcttaaagacacagtaatcgct
gctgaccaaatcatgtataccggtttccactacgcaatgattgcgggtgcatctgttggt
atcgatgacatggtaatcccagctgcgaagaaagatattatcgacgctgcagaagcggaa
gttatcgagatccaggaacagttccaaaatggtcttgtaaccgccggtgagcgctacaac
aaagttatcgatatctggtcaaatgccaacgaaaaagttgccaaggccatgatggataac
cttaagactgacatcgtaattaaccgcgatggcgaagaagaagagcaaacctcatttaac
tctgtttatatgatggccgactctggtgctcgtggtagtgccgctcagattcgtcagcta
gcgggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacgccaatcacg
gctaacttccgtgaaggtcttaacgtacttcagtacttcatctctactcacggtgcgcgt
aaaggtctagccgatacagcacttaagactgcgaactcgggttacctaactcgtcgtcta
gtagatgttgcacaagatttggttattactaacgacgactgtggcaccttcggtggtgtt
cagatgacaccgctaattgaaggtggtgacgttgtagaaccacttcgtgagcgtgtacta
ggtcgtgtagttgcagaagatgtagttaaaccaggtactacagaagtattggttgagcgt
aatgtgttactagacgaagcgctagtagacatgcttgaagctaactctgttgaccaaatt
caagtacgctcggttatcacctgtgataacgacttcggtgtgtgtgcaaactgttatggt
cgtgaccttgctcgcggacatatggttggaagcggtgagtctgtgggtgttattgccgca
cagtcaatcggtgaaccaggtacacagcttaccatgcgtacgttccacatcggtggtgcg
gcatcacgagcttctgctgagaacagcgttcaggttaaaactgcgggtagccttaagcta
cacaatgaaaaatcagtacgtaactcagacggcaaagtggttattgtttctcgttcaaca
gaacttactgttatcgatgaacaaggtcgtgagaaagagcgctataaagtaccttacggt
gctgtacttagcgtggatgacggtgcaactattgcagctggcgacgttgttgctaactgg
gatccgcatagtcacccaatcgttactgaacgtgcagctaagattagcttcgccgacatc
gacgactctaacaccgagatgcaacaagacgaattaactggtcttacgcgtatcgtagtt
aaagatcttgcgaagagtaactctaaagaacctaaacttatcctagaaagtgatgagttc
ggtcttcaagagattcgcctgccaagctttacgactatcgaagcgaaagaaggtaaggtt
gctaacgaaggtgacgtgttagcacgtatacctcaagaaagctcgaagacacgtgatatc
acgggtggtctacctcgcgtagccgacttgtttgaagcacgtaagcctaaagagccagct
atccttgctgaagtttcaggtactattggtttcggtaaagaaaccaaaggtaagaaacgt
ttggttatcacgccgccagagggtgatgcatacgaagagatgattccaaaatggcgtcag
cttaacgtgttcgaaggtgagaaagtggaacgtggtgaagttattgcagatggccctgag
tcaccgcatgacatcttgcgtctacgtggtatctctgctgtagcaaactacatcgtgaac
gaagttcaggaagtttaccgtctacagggtgtaaaaattaacgataagcacatcgaagtt
gttattcgtcagatgttgcgtaagtgcgttattacccattcaggtgatactcagttcctt
gaaggcgaacaagttgaagtgtctaacgtgaaagtgaccaaccgtgaagttgaaaaacac
ggtaagatcccagcgcagtatgaaacacaactgcttggtatcactaaagcgtcgctatct
actgagtcattcatctcagctgcatcgttccaagaaacaacacgtgttcttaccgaagct
gcagttcaaggtaaagaagatgaccttcgcggtctgaaagaaaacgtaatcgtgggtcga
ttgattccagcgggtacaggtttcgcttaccatgaacgtcgcgcacaacgtcgtaaagaa
gaaatcgaagaaatgtcagtttctgctgcagatgcagaacaggcactaaccgaagcgctt
aacgccggtgacgactcagccgaataa
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integrated database retrieval system
