Alteromonas sp. Mex14: BM527_08150
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Entry
BM527_08150 CDS
T10272
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
altm Alteromonas sp. Mex14
Pathway
altm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
altm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BM527_08150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
altm03019
]
BM527_08150
03009 Ribosome biogenesis [BR:
altm03009
]
BM527_08150
Enzymes [BR:
altm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BM527_08150
Messenger RNA biogenesis [BR:
altm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BM527_08150
Ribosome biogenesis [BR:
altm03009
]
Prokaryotic type
rRNA processing factors
BM527_08150
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
APD88146
LinkDB
All DBs
Position
complement(1919805..1923251)
Genome browser
AA seq
1148 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE
RHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIVQIDKEERGQKGAALTTFLSLA
GSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLELPDGMGLIVRTAGVGKSYEELEWD
LKVLLKHWEAISEVSQEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQH
IQLVRPDFASRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMK
DAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLALSIL
RILEEESIKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTPHYQ
VLRRRPDDVLSDASYEVELMPAVETETEVSTTAPVKREEPALKGLVAPTAAPVVAPKEEP
VKKADDVPSLFARIGKWINDLFGSDSEQEASQDKKQQADENSKPRNNRSRNNDDRRRKPR
NKNNRRGTQSQNRDQAKDQNRDREEQDNRKPRSEQRPEQEEKRSSKGRKPRKAQQPRDEQ
PKPKQEKQEGEQQENQAQKKREVAERRKRRDKRRSVRVNKDEVASDTIEQIDAKAPSAPK
GDDAVKAPQQESKAQSKPKSDAKPQKATKSADVEDKAESVVEQEQKPQPKKPAKKATDSA
AEATTTPDVEKPEEGQAETFDSTDANAEENGQKREGRGRSRRSPRHVRAAGQRRKKESQL
ADDSETQAKQPGELESQDSEAKVESPVKSDAPVVEETQAQEPGQLTPADEQPVSTQEKQQ
AAKLDVEAVQDELQFDAEPLAEKVEPSAEGEKPSAEKQEPSAEVEKPSAEVEKPLEEADN
SVETADSTDEKPVAEQTRASEDKAPVADTAPVADSLAPKEEEKPEVPAASQETTASPEQV
EINLADTSETLGSENTEEPVSEDATSETAVETPVVSKQVDDSVASSTEVSLAASGKGKRG
ASHPMALPATVNDTFVDVALTAKADDARPALTVSGKTAAMARVASRASAPTTLPKSAETA
VEPETAAE
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaatgcaactcagcaagaagagttgcgcgtagcccttgtcgatgggcaacgg
ttgtacgatttagatatagaaagcccagggcacgagcaaaaaaaagcaaatatttacaag
ggtaagataacccgcgttgaacctagcttagaagctgcttttgtcgactacggcgctgaa
cgccacggttttctccccctcaaagaaatagcccgcacttacttccctaaaggttacaaa
ttcgaaggccgcccgaacatcaaagatgtgattaaagaaggccaagaagttattgttcaa
attgataaagaagaacgcggtcaaaaaggcgctgccctcaccacatttctttcacttgca
ggtagctatttggtacttatgccaaataatcctcgtgctggtggtatatctcgccgtatt
gaaggcgacgagcgcacagagctaaaagagtcgcttagcaaactcgaacttccagacggc
atgggccttattgttcgtactgctggcgtaggaaaatcttacgaagaattagagtgggat
ttaaaagtacttctgaagcactgggaagctatttcagaggtttctcaagagcgtgaagca
ccgtttctaatccaccaagaaagtaacgttatcgtacgtgcgatccgtgactatcttcgt
cgcgatattggtgaaatcctaattgataaaaccagcatatatgagcaggcgctacagcat
attcagctagtacgacctgactttgcaagccgcgtaaaattgtaccgcggtgaagttcca
ctgtttagtcactatcaaattgaaagccaaatcgagtctgcattccaacgtgaagttcgc
ttaccttctggtggctcaattgttattgacccaacagaggcactaacttcaatcgatatt
aactctgctcgcgcaacgaagggcggtgatattgaagaaactgcgctcaacaccaactta
gaagccgcagacgaaattgctcgtcagttgcgtctgcgtgacttaggtggccttgtggtt
atcgactttatcgatatgacccctgtgcgccatcagcgtgaagtagaaaaccgcatgaaa
gatgcagtgagaagcgaccgagcacgtgttcagttagggcgtatttcacgctttggcctg
cttgagatgtctcgtcaacgcttacgcccgtcgttaggcgaatcagcgcaccacgtgtgc
cctcgctgttcgggccatggcactattcgcggaaccgaatctttagcgctttctattctt
cgtattttggaagaagaaagtatcaaagaaaatacagggcaaattgaagcgcaactacct
gttccagtagcaacctatctacttaacgaaaagcgtaaatcaattcaactgttagaaaag
cgtcatggtgttgatttattgcttattccaaacgctaatttagatacgccgcattaccaa
gtattacgccgtcgtcctgatgatgttctatcagatgctagctacgaagtagagttgatg
ccagcggtagaaacagaaactgaagtttcaaccacggccccagttaagcgagaagagcct
gcacttaaaggcttagttgcacctacggcagcgccagtagttgcgcctaaagaagagccg
gttaagaaagctgatgatgtgccttctctatttgctcgtatcggcaagtggataaatgac
ttgtttggttctgatagtgaacaagaagcaagtcaagacaagaaacaacaggctgacgaa
aatagtaagccgcgaaacaaccgcagtcgtaataatgacgaccgacgccgtaagccacga
aacaagaacaaccgtcgaggcactcagtctcaaaacagagaccaagctaaagaccagaac
cgcgatcgcgaggagcaagacaatcgcaaacctcgcagtgagcagcgtccagagcaagag
gaaaaacgcagcagcaagggccgtaagccgcgcaaagcacagcagcctcgtgacgagcag
ccaaagcctaagcaggaaaagcaagaaggcgagcagcaagaaaaccaagcgcagaaaaag
cgtgaagtagctgaacgtagaaagcgccgtgacaagcgtcgtagtgttcgcgtaaataaa
gatgaagttgcatctgatactattgagcagattgatgcaaaagcgccgtcagcaccaaaa
ggtgatgatgcggtaaaagcacctcaacaagagagcaaggcgcaaagtaaacctaagagc
gatgcgaagcctcaaaaagcaacaaagtctgccgatgtagaagacaaagcagaaagtgtt
gtagagcaagaacaaaagccacagcccaaaaagcctgcaaagaaagctactgattctgca
gcagaggcaacaacgacacctgacgtcgaaaagccagaagaaggccaagctgaaacgttc
gactctacagatgctaacgctgaagaaaatggacagaaacgagagggacgcggacgttca
cgccgttctcctcgccacgtccgtgcagccggtcagcgtcgtaagaaagaatcacagtta
gcggatgattcagaaacacaggccaagcagccaggcgagctagagtctcaggattcagag
gcaaaggttgagtctcctgttaaatcagacgcccctgttgttgaggaaactcaagctcaa
gagcctggtcaattaacaccggcagacgagcagcctgtatcaacacaagagaagcaacaa
gctgctaaactcgatgtggaggcggttcaggatgagctacaatttgacgcagagccttta
gctgagaaggtagagccgtcagccgaaggtgaaaagccgtcagctgagaaacaggagcct
tcagcagaagttgaaaaaccatcagcagaagttgaaaagcctctagaagaagctgataac
tccgttgaaacagcggactcaactgacgaaaaaccagtggctgaacaaactcgcgcgtca
gaagataaagcgccggtagcagacaccgctcctgttgctgatagcttggccccgaaagaa
gaagagaaaccagaggttcctgctgcttctcaagaaacaacggcgtcgccagaacaagtt
gagattaacttagctgatacatctgaaacgttaggttctgaaaacacggaagagcctgtg
tcagaagatgcgacatcagaaacagcagttgaaacacctgtagtttctaagcaggttgat
gacagcgtcgcctcctccactgaagttagccttgcggctagtggaaaaggtaagcgtggc
gcatcacatccgatggccctacctgcaacagtgaacgacacattcgttgatgttgcgcta
acggccaaagctgatgacgctcgccctgccctaacagtatcaggaaaaacagcagcgatg
gctcgcgtagcgtctcgtgcttctgcaccgactacgttacctaagtcagccgaaactgct
gttgagcctgaaacggctgccgaatag
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