Alteromonas sp. Mex14: BM527_15485
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Entry
BM527_15485 CDS
T10272
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
altm Alteromonas sp. Mex14
Pathway
altm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
altm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BM527_15485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
altm03019
]
BM527_15485
Enzymes [BR:
altm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BM527_15485
Messenger RNA biogenesis [BR:
altm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BM527_15485
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
AAA_22
HI1480
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
APD87380
LinkDB
All DBs
Position
complement(3663889..3665328)
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AA seq
479 aa
AA seq
DB search
MSFTHLGLAEPLLKAIEKRGFSTPSPIQEKAIPEILQGRDVLAAAQTGTGKTAGFGLPIL
QRLMSGQPVSGNNIRALILTPTRELAAQVEESIQAFSEFLPLKTAVVFGGVGINPQMMKL
RKGVDVLIATPGRLLDLYQQNAVKFSELEVLVLDEADRMLDMGFIHDIKRVLKLLPKDRQ
SLLFSATFSEEITALARTITRDPVSISTAPANTTVDAVEQHLVTIDKSKKTTALICLIKQ
QKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKSGEIKVLVAT
DIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVSVDELQNLKDIET
LIQKLLPRETLEGFEPQQAVPPTTLSKPKKPKKPKAAKTLMDDENNQGEQKSRSRRSGQS
QNNKAGNSSNRSGNSSGRSSAGGKPARRRSAGAEGSGAHRSANRRNNYSSSQSSASSSN
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacccatttagggctcgctgaacctttattgaaagctatcgaaaaacgtggg
tttagcacaccatcacctattcaagagaaagccattcctgaaatattacaaggcagagat
gtgttggccgctgcacaaacgggaaccggaaaaacggcgggctttggtcttcctatctta
caaaggctaatgtcgggacagccggtatcgggcaacaatattagagcgcttattttgacg
cctacccgcgagttggccgcccaggtcgaagaaagtattcaggcatttagcgaattttta
ccgcttaaaacggccgtcgttttcggcggcgtcggtatcaaccctcaaatgatgaagctt
cgtaaaggggttgacgtattaattgcaacacctggcagattactcgatctttatcagcaa
aacgcagtgaagttttctgagctagaggtcttggttcttgacgaagctgacagaatgcta
gacatgggctttattcacgatattaaaagagtgctcaaactattacctaaagatcgtcaa
agtttacttttctctgcaaccttctcagaagagataacggcactagcgagaacaattacc
cgtgatccggtaagcatttctactgcaccagcaaatacgacagtagatgctgtagaacag
catttggttactatcgataagtctaaaaaaaccaccgcacttatctgcttaataaagcag
cagaagtgggagcaagtattggtgtttagtcgcactaaacatggcgcaaaccgaatcgcc
gaaaagctcactcgttcaaaaattccaagcgctgcaattcacggaaacaagagccaaggc
gccagaacgaaagcgctcgctgacttcaaaagtggtgaaattaaggttttggttgctact
gatattgctgcccgtggtatcgacatcagtgagttaccgatagtggtaaacttagactta
ccgaatacagccgctgactatgtgcatagaattggacgtacaggacgtgcaggagcaagc
ggtcaggcatggtcgtttgtgagtgtcgatgaactgcagaaccttaaagatattgaaacg
ctgattcaaaagctgcttcctagagaaaccttggaaggttttgagcctcagcaagccgtt
ccaccaaccactttgtctaaaccaaagaagcctaagaaaccaaaggctgctaagacgttg
atggacgatgagaataaccaaggtgaacaaaaatctcgaagcagaagaagtgggcaaagc
cagaacaataaggctgggaatagcagtaatcgctcgggtaattcgagtggaaggtcaagt
gcgggtggtaaacctgcgagacgcagaagcgctggagctgaaggtagtggcgcgcatcgc
tcggcaaatcgtagaaataattattcttcaagccagagcagtgcttcaagctctaactag
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