Alteromonas sp. Mex14: BM527_17330
Help
Entry
BM527_17330 CDS
T10272
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
altm Alteromonas sp. Mex14
Pathway
altm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
altm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BM527_17330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
altm03021
]
BM527_17330
03400 DNA repair and recombination proteins [BR:
altm03400
]
BM527_17330
Enzymes [BR:
altm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BM527_17330
Transcription machinery [BR:
altm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BM527_17330
DNA repair and recombination proteins [BR:
altm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BM527_17330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
BING4CT
Motif
Other DBs
NCBI-ProteinID:
APD87712
LinkDB
All DBs
Position
complement(4098535..4102707)
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLNEEEYLDALEEHGDEFDAKM
GAEAVFDLLKALDVDADVAAMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKLVEREAPEVWDVLDDVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDKVNGLGEGMVFTSPNEAEKAYRTG
NAELHSRVKVRITEYDIDEDGNKTEKVTLTDTTVGRAIFSLILPKGLPFEIINQAMGKKQ
ISRLLNACYRTLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPEAKKEIIDAAEAE
VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKTDIVINRDGEEEEQTSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFEGVTMTPLIEGGDVVEPLRERVL
GRVVAEDVLKPGTNEVLVERNVLLDEALVDMLEANSVDQIQVRSVITCDNDFGVCAKCYG
RDLARGHMVGSGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGSLKL
HNAKFVRNSDGKVVIVSRSTELTVIDEQGREKERYKVPYGAVLSVDDGASIAAGDVVANW
DPHSHPIITERAAKISFADIDDSNTEMQQDELTGLTRIVVKDLAKVNSKEPKLILESDEF
GLQEIRLPSFTTIEAKEGKVANEGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEISGTIGFGKETKGKKRLVITPAEGDAYEEMIPKWRQLNVFEGEKVEKGEVIADGPE
SPHDILRLRGISAVANYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCIITHPGDTQFL
EGEQVEVSNVKVANREIEKHGKIPAQYETQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRAQRRKEQIEEMSVSAAEAEQALTEAL
NAGADEDTAE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaagcaacaaaacaagaccgaagaattcgataatatt
cgaatcggtctgtcttcacctgacatgattcgttcatggtcatttggtgaagtgaaaaag
cctgaaacaattaactaccgtacgttcaagcctgagcgtgacggtctgttctgtgcgcgt
atctttggtccggttaaagactacgagtgtctttgcggtaagtacaagcgccttaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagttacactgaccaaagtacgtcgtgag
cgtatgggtcacatcgagctagctagcccggttgcgcatatttggttccttaaatcactt
ccgtctcgtatcggtctaatgcttgatatgacacttcgtgatattgaacgtgttctttat
ttcgaatcatacgtggttacagagccaggtatgacgacgcttgagcgcagtcaacttctt
aacgaagaagagtacttggatgcacttgaagagcacggtgatgagtttgatgcgaagatg
ggtgctgaagcagtattcgatcttctaaaagcgttagacgttgatgcagacgtagccgct
atgcgtgaagagctgccttcaatcaactctgaaaccaagcgtaagaagattactaagcgt
cttaagttacttgagtcattccaacagtctggtaacaagccagagtggatgatcatgacg
gtacttccggtacttccaccagacttacgtcctctagtaccactagatggcggccgtttt
gcaacgtctgaccttaacgacctataccgtcgtgttattaaccgtaacaaccgtcttaag
cgtcttctagaccttgctgctccagacattatcgtacgcaacgaaaagcgtatgcttcaa
gagtctgttgatgcgctactagataacggacgtcgtggtcgtgcgattaccggttctaac
aagcgtccacttaagtcgcttgctgacatgatcaaaggtaagcaaggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactactcaggccgttctgtaattaccgttggtccaacg
ctacgtcttcaccagtgtggtcttcctaaaaagatggcacttgagctatttaaaccgttt
atctacggtaagcttgaagcacgtggtcttgcgacaacaatcaaagcagctaagaagctt
gtagagcgcgaagctccggaggtttgggacgtactagacgacgttatccgcgaacacccg
gtactacttaaccgtgcacctacacttcaccgtttgggtatccaagcattcgaaccaaca
ctaatcgaaggtaaagcgattcagcttcacccgctagtgtgtgcggcgtacaacgccgat
ttcgatggtgaccaaatggcggtacacgttccgttgacaatcgaagcacagttagaagca
cgtgcactaatgatgtcaacgaacaacattctgtcacctgcgaatggtgagccaatcatc
gtaccttcacaggacgttgtattaggtctttactacctaacgcgtgacaaagtaaacggc
ttaggcgaaggcatggtatttaccagcccgaatgaagcagaaaaggcataccgcacaggt
aatgctgagcttcactctcgcgttaaagtacgtattactgaatatgacatcgatgaagat
ggcaacaaaactgagaaagtaacgctaactgacactaccgttggtcgtgcgattttctcg
ttgatccttccaaagggtctgccgtttgaaatcattaaccaagcgatgggcaagaagcaa
atttcaagactattgaatgcttgttaccgtacgctaggtctgaaagacacagtaattgct
gctgaccaaatcatgtataccggtttccactacgcgatgatcgcgggtgcatctgttggt
atcgatgatatggttattccagaagcgaagaaagagattatcgacgcggcggaagcagaa
gttatcgaaattcaggaacagttccaaaacggtcttgttaccgcgggtgagcgttacaac
aaagttatcgatatctggtcaaatgccaacgaaaaagttgctaaggccatgatggataac
cttaagactgacatcgtaattaaccgcgatggcgaagaagaagagcagacatcatttaac
tctgtttatatgatggccgactcgggtgctcgtggtagtgccgctcagattcgtcagctt
gcaggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaaccccaattacg
gcgaacttccgtgaaggtctgaacgtactacagtacttcatctctactcacggtgcgcgt
aaaggtctagcggatacagcacttaaaacggctaactcgggttacctaacccgtcgtcta
gtagatgttgcgcaagatttggttatcactaatgacgactgtggcacattcgaaggtgta
acaatgacaccgctaatcgaaggtggagacgttgttgagccgctacgtgaacgtgtactt
ggtcgtgttgtagcagaagacgtgcttaagcctggtactaacgaagtacttgttgagcgt
aacgttttgctagacgaagcactagtagacatgcttgaagctaactcagtagaccaaatt
caagtacgctcggttatcacttgtgacaatgacttcggcgtatgtgctaagtgttacggt
cgtgaccttgcacgtggccacatggttggtagcggtgaatcggtcggtgttattgcagca
cagtcaatcggtgaaccaggtacacagcttaccatgcgtacattccacatcggtggtgcg
gcatcaagagcatctgctgagaacagcgtacaagttaagactgcgggtagccttaagcta
cacaacgcgaaattcgtacgtaactctgacggcaaagtggttatcgtttctcgttcaaca
gaacttactgttatcgatgagcaaggccgtgagaaagagcgctataaagtaccttacggt
gctgtgcttagcgtggatgacggtgcatcaattgcagctggcgacgttgttgctaactgg
gatccgcatagtcacccaatcatcactgaacgtgcagctaagattagcttcgcagacatt
gatgactctaacaccgaaatgcagcaagacgagcttactggtttaacacgtatcgttgtt
aaagaccttgcgaaagttaactctaaagagcctaagctaattcttgaaagcgacgagttc
ggtcttcaagaaattcgtcttccaagcttcacaacaattgaagcgaaagaaggcaaagtg
gcgaacgaaggtgacgtgttagcacgtattcctcaggaaagctcgaagactcgtgatatc
acgggtggtctaccgcgcgttgcggacttgtttgaagcacgtaagcctaaagagcctgct
attcttgcagaaatctcaggtactatcggcttcggtaaagagaccaaaggtaagaagcgt
cttgtgattacacctgctgagggtgacgcatacgaagaaatgattcctaagtggcgtcag
cttaacgttttcgaaggggagaaggtggaaaaaggcgaagttatcgctgatggtccagag
tctccgcacgatatcctacgtttacgtggtatctcagcagtagccaactacatcgtgaac
gaagttcaggaagtataccgtctacagggcgttaagattaacgataagcacatcgaagta
gttattcgtcagatgctacgtaagtgtattatcacgcacccaggcgatacgcagttcctt
gaaggtgaacaggttgaagtatcgaacgttaaagtggcgaaccgtgaaattgaaaaacac
ggcaagatcccagcgcagtatgaaacacagctgcttggtatcactaaagcgtcactgtct
actgagtcgtttatctcagcagcgtcgttccaggaaacaacacgtgttctaactgaagct
gcggttcaaggtaaagaagatgacctacgcggtctgaaagaaaacgtaatcgttggtcgt
ctaattccagcgggtacaggtttcgcttaccatgaacgccgtgcacaacgtcgcaaagag
caaatcgaagaaatgtcagtttcagctgctgaagcagaacaggcactaaccgaagcgctt
aatgccggtgcagacgaagatactgccgaataa
DBGET
integrated database retrieval system
