Altererythrobacter sp. N1: LBX01_01260
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Entry
LBX01_01260 CDS
T10199
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
altn Altererythrobacter sp. N1
Pathway
altn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
altn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LBX01_01260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
altn03021
]
LBX01_01260 (rpoC)
03400 DNA repair and recombination proteins [BR:
altn03400
]
LBX01_01260 (rpoC)
Enzymes [BR:
altn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LBX01_01260 (rpoC)
Transcription machinery [BR:
altn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LBX01_01260 (rpoC)
DNA repair and recombination proteins [BR:
altn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LBX01_01260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
YqfD
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
UBS33287
LinkDB
All DBs
Position
complement(258035..262369)
Genome browser
AA seq
1444 aa
AA seq
DB search
MNELTKFTNQLAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLEAQDEYGEDSFSAG
IGAEAVKFMLMDLDLERERDDLLEELATTKSKLKPAKIIKRLKVVESFIDSGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMDREGEPGEGMLLADMAEVHQALEV
GAVTLHSKITSRVPQTDEAGKQYMKRVDTTPGRMLIGECLPKNHKVPYEVINRLLTKKDI
GDVIDEVYRHTGQKDTVLFADAIMSLGFRHAFRAGISFGKDDMIIPDSKVELVDQTKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVADAMMDEIRARPRDADGREAQINSIYMM
SHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVIVETDCKTQNALEMRAIVQGGSVIASLGERILGRTVA
EDIVNAATGEVIAKAGTLLDEPMVKAIEEAEVQVAKIRSPLICEAEQGVCATCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSHLESISDGKIEYRDMPTI
IDKRGKILSMARNGELAVVDAEGREREIHKVPYGTVLMFKDGDAVKEGDRLAEWDPFTLP
IITEQSGTVRYQDLIDGTTMEERVDETTGIAQRVVTELRASGRKKKEDLRPRLTLLGEGQ
TDDGETEAQRYMLAPGTTLSVEDGQQVEAGDILARASREAAKTRDITGGLPRVAELFEAR
IPKDNAVIAKISGKIEFVREYKAKRKIAIVPEEGEAVEYLIPKTKVIDVQEGDFVKKGDT
LISGSPNPHDILEVMGVEALAEYLVNEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDG
GDTVLLPGEQVDLEEMNEANAKLGKGKQPATGTPILLGITKASLQTRSFISAASFQETTR
VLTQAAVEGKRDSLIGLKENVIVGRLIPAGTGAGMNRMRVTASSRDAALRAQWKKAQEAI
IAANSAAEERAAEALRDPLDDTGNDPLAAVEGETHGTDADAGEYLQTAEDTAAEDTASED
KAED
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaaattcaccaaccagctggccaagccggaaaccttcgaccagatc
cagatcggcatcgcatcgcccgaacgcatccgttcgtggtcgttcggtgaaatcaagaag
cccgaaacgatcaactaccgcacgttcaagcctgagcgtgacggcctgttctgcgcgcgc
atcttcggcccggtgaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtgaccgtgaccaaggtccgccgcgaa
cgcatgggccacatcgaactggccgcgccggtcgcgcacatctggttcctcaagtcgctg
ccttcgcgcatcggcctgctgctcgacatgcagctcaagcagcttgagcgggtgctgtat
ttcgaaagctacatcgtcaccgaaccgggcctgaccccgctggaaaaattccagctcctg
accgaagacgaactgctcgaagcgcaggacgaatacggcgaagacagctttagcgccggg
atcggggccgaagcggtcaagttcatgctgatggacctcgatcttgagcgtgagcgtgac
gatctgctggaagagctggcgaccaccaagtccaagctcaagcctgccaagatcatcaag
cgtctgaaggtcgtggaaagctttatcgattcgggcaaccgccccgaatggatgatcctt
gaagtgatcccggtcatcccgcccgaactgcgcccgctggtgccgctggatggggggcgg
ttcgcgacgtcggacctcaacgatctctatcgccgcgtcatcaaccgtaacaaccgcctc
aagcgcctgatcgaactgcgcgcgccggacattattgtccgcaacgaaaaacgcatgttg
caggaagccgttgacgcactgttcgacaacggccgccgtggccgcgtgatcaccggggcg
aacaagcgtccgctgaaatcgctgtccgacatgctcaagggcaaacagggccgcttccgt
cagaacctgctgggtaagcgcgtcgactattcgggccgttcggttatcgtgaccgggccg
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccgcctcgatgccaagggtctgtcgatgactctgaagcaggcgaagaaa
tgggtcgagaaggaacgcaaggaagtctgggacatcctcgacgaagtgatccgtgaacac
ccggttatgctgaaccgcgcacccacgcttcaccgtcttggcattcaggcgttcgaaccc
gtgctgatcgaaggtaaggcgatccagcttcacccgctggtctgctcggccttcaatgcc
gacttcgatggtgaccagatggcggttcacgtaccgctttcactggaagcgcaactcgaa
gcgcgtgtgttgatgatgtccaccaacaacatcctcagccccgcgaacggcaagccgatc
atcgttccgtcgcaggatatggtgctgggtctgtattacctgtcgatggaccgcgaaggc
gagccgggcgaaggcatgctgctggccgatatggccgaagtgcatcaggcactggaagtg
ggcgcggtgacgctccactccaagatcaccagccgcgttccgcagaccgacgaagcgggc
aagcagtatatgaagcgggtggataccactccgggccgtatgctgatcggtgaatgtctg
ccgaagaaccacaaggttccttacgaagtcatcaaccgcctgctgaccaagaaagacatc
ggcgacgtgatcgacgaagtctatcgccacaccggccagaaggacaccgtgctgtttgcc
gacgcgatcatgtcgctcggtttccgccacgcgttccgtgcgggcatttcgttcggcaag
gacgatatgattatcccggattcgaaggtcgaactggtcgatcagaccaaggccctcgtt
gccgattacgagcagcagtatcaggacggcctgatcacgcagcaggaaaagtacaacaag
gtaatcgacgcgtggagccgttgcggcgaccaggtggcggacgccatgatggacgaaatt
cgtgcgcggcccagggatgccgacggtcgtgaagcgcagatcaactcgatctacatgatg
agccactccggtgcgcgtggttcgccagcgcagatgaagcagctcgcgggtatgcgcggc
ctgatggccaagccttcgggcgaaatcatcgaacagccgatcatctcgaacttcaaggaa
ggtctgaccgttcttgaatacttcaactcgacccacggcgcgcgtaaaggcttggccgat
accgcgctgaagacggcgaactcaggctacctgacccgccgtctggtcgacgtgtcgcag
gactgcgtgatcgtcgaaaccgattgtaagacccagaacgcgctggaaatgcgggccatc
gttcagggtggttcggtgatcgcatcgctgggcgaacgtatccttggccgcaccgtggcg
gaagatatcgtcaacgccgcgaccggcgaagtgatcgccaaggccggcactctgctcgac
gaaccgatggtcaaggctatcgaagaggccgaagtgcaggtggcgaagatccgttcgccg
ctgatctgcgaagccgaacagggcgtttgcgcgacctgctacggtcgtgaccttgctcgc
ggtacgccggtgaacatcggtgaagcggttggcgtgatcgcggcgcagtcgatcggtgaa
ccgggcacgcagctgacgatgcgtaccttccacatcggcggtgcggcgcagctgaacgaa
accagccacctggaatcgatttcagacggtaagatcgaataccgcgacatgccgaccatc
atcgacaagcgtggcaagatcctgtcgatggcgcgtaacggtgaactggcggtggtcgac
gccgaagggcgtgaacgcgaaatccacaaggtgccgtatggtactgtcctgatgttcaag
gatggcgatgcggtgaaggaaggcgatcgcctggccgaatgggatccgttcaccctgccg
atcatcaccgaacagtcgggtacggtccgttatcaggatctgatcgacggtacgacgatg
gaagagcgcgtcgacgaaaccacgggcatcgcccagcgtgtcgtcaccgaactgcgcgca
tcgggtcgcaagaagaaggaagatctgcgtccgcggcttacgctgctgggcgaaggccag
accgacgacggcgaaaccgaagcgcaacgctacatgctcgcacctggcaccacgctgtcg
gtcgaagatgggcagcaggtcgaagcgggtgacattctcgcccgtgcatcgcgtgaagcc
gccaagacccgcgacatcaccggcggtctgccgcgtgtcgccgaattgttcgaagcgcgt
ataccgaaggacaatgcggttatcgccaagataagcggcaagatcgaattcgttcgtgaa
tacaaggccaagcgcaagatcgcgatcgtgccggaggaaggtgaagcagtcgagtacctg
atccccaagaccaaagtgatcgacgtgcaggaaggcgacttcgtgaagaagggcgatacg
ctcatctccggttcgcccaacccgcacgacattctggaagtcatgggtgttgaggcactg
gccgaatacctcgtgaacgaaatccaggaagtctatcgtttgcagggcgtgaagatcaac
gacaagcacatcgaggtgatcgttcgccagatgctgcagaaggttgaaatcaccgacggt
ggcgacaccgtgctgctgccgggcgaacaggtcgatctggaagaaatgaacgaagccaat
gccaagcttggcaagggcaagcagcctgccacgggcacgccgatcctgctggggatcacc
aaggcgagcctgcagacccgctcgttcatctccgccgcttcgttccaggaaaccacccgc
gtgctgacgcaggcggcggtcgaagggaagcgggactcgctgatcggtctgaaggaaaac
gtgattgttggccgcctgatcccggcgggcacaggcgcgggcatgaaccgcatgcgcgtg
accgcatccagtcgcgacgccgctctgcgcgcgcagtggaagaaggcgcaggaagcgatc
atcgctgccaactccgccgcagaagaacgcgccgccgaagcgctgcgcgatccgctcgac
gacactggcaacgatccgctggccgcggtcgaaggcgaaacccacggcaccgatgccgat
gcgggcgaatacctgcagaccgccgaagacactgccgccgaggacacggcgagcgaagac
aaggcagaggattga
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