Altererythrobacter sp. N1: LBX01_02650
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Entry
LBX01_02650 CDS
T10199
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
altn Altererythrobacter sp. N1
Pathway
altn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
altn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBX01_02650 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
altn03019
]
LBX01_02650 (recQ)
03400 DNA repair and recombination proteins [BR:
altn03400
]
LBX01_02650 (recQ)
Enzymes [BR:
altn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBX01_02650 (recQ)
Messenger RNA biogenesis [BR:
altn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBX01_02650 (recQ)
DNA repair and recombination proteins [BR:
altn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LBX01_02650 (recQ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SecA_DEAD
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
UBS34607
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All DBs
Position
complement(544674..546467)
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AA seq
597 aa
AA seq
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MFAPSADLAHARAALREVFGFDSFRGVQDQVVARVLAGESTLAVMPTGAGKSLTYQLPAT
MMDGTCVVVSPLIALMHDQLRSARANGIAAATLTSADADWRETMDAFRRGDLDLLYVAPE
RASQPQFRDLLASTRIALFAIDEAHCVSEWGHDFRPDYRQLRPLMDAFPDVPRLALTATA
DAHTRIDILTQLGIPESGLIVAGFDRPNIRYAIRDRDNPARQVAALMAEQPGPGIVYAPT
RARVEKLAEQLAAATGRSVLPYHAGLPPEQRAANQAAFVASEDMVIVATIAFGMGIDKPD
VRFVAHAGIPKSIEAYYQETGRAGRDGDPAQAVMLWGASDFATARQRLSEVDESRRQSER
QRLDALAGLVETPGCRRGVLLRHFGEHPPERCGNCDNCLSPPGVTDATELARKLLSAVYR
TGQTYGFGHVQKVLTGSNDARVAERGHDRLSVFGIVTGEDARLLQPLSRALQARGSLTAT
EHGGLQLAGDAKAILKGEASVEIVIPPRRERSNRRRGTNAETNPVSDPLFDALRERRRQL
AQDAGVPPYVVFHDAVLREMAARRPQSRDELSAIGGVGAKKLDAYGDEFLAVIRHAD
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccccgtctgccgatcttgcccatgcccgtgccgccttgcgagaggtgttcggt
ttcgacagctttcgcggagtgcaggatcaggttgtcgcccgcgttctggcaggtgagtcg
acgctggcggtaatgccgaccggggcagggaaatcgctgacgtatcagttgcctgcgacg
atgatggacggcacctgcgtggtggtaagcccgctgatcgcgctgatgcacgatcagctt
cgttccgcgcgggccaatggcatcgccgctgccacgctgaccagcgccgatgccgactgg
cgcgaaacgatggacgcgtttcgtcgtggcgatctcgatctgctttatgtcgccccggaa
cgggccagccagccgcaattccgcgatttgctggccagtacgcggattgcgctgttcgct
atcgacgaagcgcattgcgtatccgaatggggtcacgatttccggcccgattaccggcaa
ctgcgtccgttgatggatgcattccccgatgtgccccgcctggcgctgaccgcgacagcg
gatgcgcatacacgcatcgatattctgactcagctcggcatcccagaaagcgggctgatc
gtggccgggttcgatcggcccaatatccgctatgccatccgcgatcgcgataatcccgcg
cggcaagtggctgcgttgatggctgaacagccggggccgggcatagtctatgcaccgact
cgtgcgcgggtggaaaagctggccgaacagctcgccgcagcgaccggacgatcagtgctg
ccatatcatgccggtctgccgccagaacagcgcgccgccaatcaggcggcttttgttgcc
agcgaagatatggtgatcgtcgcgacgattgctttcggcatggggatcgacaagccggat
gtgcggtttgtcgcccatgcgggtatccccaaatcgatagaggcctattatcaggaaacc
gggcgggcggggcgcgatggcgatcccgcacaggcggtcatgttatggggcgcgagcgat
tttgccaccgcgcgccagcgattgagcgaagtggacgaatcccgtcgccaatcggaacgg
cagcggctcgacgcgctggccggtctggttgaaacgccgggttgtcggcgcggtgtcctg
ctgcgccatttcggggaacatccgccagaacgatgcggcaattgcgacaactgcctgtcg
cctcccggtgtgaccgatgcgaccgaactggcgcgcaagctgctgtcggctgtctatcgc
accgggcagacatatggctttggccatgttcagaaagtgctcaccggatcgaacgacgcc
cgcgttgccgaacgcgggcatgatcgcctgagtgtattcgggattgttacgggtgaagat
gcgcgcctgctgcagccgctgagccgggcgcttcaggcgcgtggcagcctgactgcgacc
gagcatggcggcctgcaactggccggcgatgccaaggcgatcctgaaaggcgaagcgagt
gtggagatcgtgatcccaccgcgccgcgaacggagtaatcgcaggcgcggcaccaatgca
gagaccaatccggtgagtgatccgctgttcgatgctctgcgtgagcggcgccgccagctg
gcgcaggacgcgggtgtgcccccttatgtcgtattccacgatgccgtcctgcgggagatg
gcggctcgacgaccgcaatcgcgtgatgaattgagtgccatcggcggagtaggggcaaag
aaactcgatgcctatggcgatgagttccttgcggtgatccgccatgcagactga
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