Altererythrobacter sp. N1: LBX01_08330
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Entry
LBX01_08330 CDS
T10199
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
altn Altererythrobacter sp. N1
Pathway
altn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
altn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBX01_08330 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
altn03019
]
LBX01_08330 (pnp)
03016 Transfer RNA biogenesis [BR:
altn03016
]
LBX01_08330 (pnp)
Enzymes [BR:
altn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LBX01_08330 (pnp)
Messenger RNA biogenesis [BR:
altn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LBX01_08330 (pnp)
Transfer RNA biogenesis [BR:
altn03016
]
Prokaryotic type
tRNA degradation factors
LBX01_08330 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
UBS34580
LinkDB
All DBs
Position
1768421..1770682
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AA seq
753 aa
AA seq
DB search
MFDTKTVSVEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKNVKEGQDFFPLT
VHYQEKFSSAGRIPGGFFKRERGATEKETLTSRLIDRPVRPLFPEGFYNEINVIAQVFSY
DGECEPDVLAMIAASAALTISGVPFMGPIGACRVGYVDGEYVLNPKQNTALAEDGRLDLI
VAATQDAVMMVESEAKELTEEEMLGAVMFAHDNIKPVIGAIIDLAEQAANDPWEIDASDD
TSAIKEKLRGIVGDDIAAAYKLTDKSARSDALNAARAKAKDAFADEEPQTQMVANKAVKK
LEAEIVRGAIIKDGTRIDGRKLDQVRPIEAMVGVLPRAHGSSLFTRGETQALCSTTLGTK
DAEQMIDGLEGLSYERFMLHYNFPPYSVGEVGRFGAPSRRDVGHGKLAWRALHNVLPSHD
DFPYTIRVLSDITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGSDFAVLS
DILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITKEIMEKALEQAKAGRAHILGEMTK
ALGTARTDVSKHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKISS
SDLDQIEAAKKWIQGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV
EKPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEELEDTRPPREPRSDRGGDRGG
RGGDRRGGRGPRGDRGPRRDGGGEGHVPDFLKD
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacacgaaaaccgtatcggtggagtggggcggaaagaccctcactctggaaacc
ggccgtattgcccgtcaggctgacggtgccgttctggccacttatggcgaaaccgtggtg
ctttgcgccgtgaccgccgccaagaatgtgaaggaagggcaggacttcttcccgctgacc
gttcactatcaggaaaaattctcatccgccgggcgcatcccgggtggcttcttcaagcgt
gaacgtggcgcgacggagaaggaaacactgaccagccgcctgatcgaccgccccgtgcgg
ccgttgttccctgaaggcttctataacgaaatcaacgttattgcccaggtcttcagctac
gatggcgaatgcgaacccgatgtgctggcgatgatcgctgcatcggctgcgctgaccatt
tctggcgtaccgttcatgggtccgatcggcgcttgccgtgttggctatgtcgatggcgaa
tacgttctcaaccccaaacagaacactgcactggctgaagatggccgtctcgatcttatc
gtagctgcaacccaagacgcggtgatgatggtggaatccgaggcgaaggaactgaccgaa
gaagaaatgctcggcgcggtgatgttcgctcacgacaacatcaagcctgtaatcggtgcg
atcatcgatcttgctgagcaggctgccaatgatccgtgggaaatcgacgcatcggacgat
acctccgcgatcaaggaaaagctgcgcggcatcgttggtgacgatatcgccgctgcttac
aagctgaccgacaagtcggcccgttcggatgcgctcaacgccgcccgtgccaaagcgaaa
gacgcgttcgcagacgaagaaccgcagacgcagatggtcgccaacaaggcggtcaagaag
ctggaagcggaaatcgtccgcggtgcgatcatcaaggatggcacccgcatcgatggtcgc
aagctcgatcaggtccgtccgatcgaagcgatggttggcgtgttgccgcgtgcgcacggt
tcgtcgctgttcacgcgtggtgaaacgcaggcactgtgttcgaccacgctaggcaccaag
gatgctgaacagatgatcgacgggctcgaaggcctgtcttacgaacgcttcatgctgcac
tacaacttcccgccgtattcggttggtgaagtgggcaggttcggtgcgccttcgcggcgt
gatgtgggccacggcaagctggcatggcgcgcgctgcacaacgtgctgcccagccacgac
gatttcccgtacacgatccgcgttctgtcggacatcaccgaatccaacggttccagctcg
atggcgaccgtatgcggtggctgcctgagcatgatggacgcaggcgttccgatcgaacgt
cccgtgtcgggcatcgcgatgggcctgatcctcgaaggttcggactttgccgttctgtcc
gatattctgggtgacgaagatcacctgggcgacatggatttcaaggttgccggaaccgaa
gcgggcatcacaagcctgcagatggatatcaagatcgccggtatcaccaaggaaatcatg
gagaaggcgctggagcaggcgaaggccgggcgcgcgcacatcctgggtgaaatgaccaag
gcgctgggcactgcccgcaccgacgtgtccaagcacgccccgcgtatcgaaacgatccag
atcgacaagtcgaagatccgcgacgtgatcggcaccggcggcaaggtgatccgcgaaatc
gtggccgaaaccggtgcgaaggtggacatcgacgatgaaggcgtgatcaagatctcgtct
tccgacctcgaccagatcgaagccgcgaagaagtggattcagggcatcgtggaagaggcc
gaagtcggcaagatctacaccggcaaggtcgtcaatatcgtcgatttcggtgcgttcgta
aatttcatgggtggcaaggacggtctcgtccacgtgtccgaaatgaagaacgagcgtgtc
gagaaaccgaccgacgtcgtgtccgaagggcaggaagtgaaggtaaaggtgctcgaaatc
gacaaccgcggtaaagtccgtctgtcgatgcgcgttgtcgatcaggaaaccggcgaagag
ctggaagacacccgcccgccgcgcgaaccgcgcagcgatcgcggtggtgatcgtggtggc
cgtggcggtgatcgccgtggtggtcgcggcccgcgcggtgatcgtggcccacgtcgcgat
ggtggtggcgaaggccacgtgccggatttcctcaaggactaa
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