Altererythrobacter sp. N1: LBX01_12865
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Entry
LBX01_12865 CDS
T10199
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
altn Altererythrobacter sp. N1
Pathway
altn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
altn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LBX01_12865 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
altn03400
]
LBX01_12865 (mfd)
Enzymes [BR:
altn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBX01_12865 (mfd)
DNA repair and recombination proteins [BR:
altn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LBX01_12865 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
SecA_DEAD
UB2H
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UBS32367
LinkDB
All DBs
Position
complement(2758243..2761716)
Genome browser
AA seq
1157 aa
AA seq
DB search
MPDLHRLLDARTPLTLASLPRGSQPLVLGDLARVAKGRAVFIAPDDAAMHAVAEAAQYFA
PELDVIEFPAWDCLPYDRASPALSISAGRLAALHRLQAGKAASQLLVTTVNALLQRVLTP
FRIREAVQEFRPGAVIPHDKLTAMLMRQGYSRTDTVIDHGEFAVRGSIFDVFPSGLDQGL
RLDFFGDDLESLRTFDPSTQMSTGVLDSHLLLPASEALLDENSIKRFRSRYREMFGANAT
QDPLYQAISDGRRLAGMEHWLPLFEDRMATLFDHLGQDDLLVIDAGALQAGEERLADVVD
YHRQRVEHSEGSYRPLAVDSLYLTGDEFGDALKNRPIHRASIFAEPESDHVIDFGFHSGR
DFAPERARGDNVYAAAADHLKAVGKAGKRPMLAAYSKGSRARLSSILTEAGAPTQLADSW
QEALGLAAKGKPVALILPLDTGFTNDQIDLITEQDMLGDRMVRRKKRRKDADAFLAELAA
LNAGDLVVHVEHGIGRYRGLEAIPVGKSHHDCAMLEYAGGDKLYVPVENLEVLSRYGAAE
QTVPLDRLGGEAWQKRRARLKERIREIAGELMITAAERALRTAPALEADGDSFNQFVERF
PWEETDDQDRAISDVLGDLASGKPMDRLVCGDVGFGKTEVALRAAFVAAMAGKQVAVVAP
TTLLARQHYENFSARFSGFPLKVGRLSRLVGAKEMGDTREGLRKGDVDVVVGTHAILSKS
TEFRDLGLVIVDEEQRFGVTHKEKLKQLRADVHVLTLTATPIPRTLQMAMSGLRELSTIQ
TPPVDRLAVRTYVMEWDDMVMREALLREHHRGGQSFIVVPRISDMAEVEDWLREHVPEVK
PIAAHGQMSPTEVEERMSAFYEGKYEVLLSTTIVESGLDIPSANTIVIHRADRFGLAQLY
QLRGRVGRSKLRAYAYLTTPADTALSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRGAGN
LLGDEQSGHIREVGFELYQSMLEDAIVAAKAGAMGLEPAKDAFSPQITVDAPIMIPDDYV
PDLAVRMALYRRLNDAKGKAEIEAMAAEMIDRFGPLPQPTANLVRLIEIKQQAIDAHIAK
IDVGARGTLVTFHNDDFPDPAGLIGWVERVGETAKLRPDMKLVLSRAWGDPQSRLNGLFQ
LTKGLSAVARKAKKKAG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatcttcaccgcttactcgacgcccgcacaccgctaactctggcttcgctgccg
cgcggcagtcagccgctggtgctgggcgatctggcgcgggtggcgaaagggcgcgcggtg
ttcatcgcgcccgacgatgccgcgatgcatgctgtggccgaagcggcgcagtacttcgca
cccgaactggacgtgatcgagtttccggcatgggattgtctgccgtatgatcgtgccagc
cccgcgctgtcgatcagtgccgggcggctggcggcgctgcatcgcctgcaagcgggcaag
gcggccagccagttgctggttacgacagtcaatgccctgctgcaacgggtgctgaccccg
ttccgtattcgcgaggcggtgcaggaatttcgccccggtgcggtgatcccgcatgataag
ctgaccgcgatgctgatgcggcagggctattcgcgcaccgataccgtgatcgaccacggc
gagttcgcggtgcgcggttcgattttcgatgtgttcccttcggggctggatcagggcctg
cggctcgatttcttcggagatgatctggaatcgctgcgaaccttcgatccttccacgcag
atgagcaccggtgtgctcgacagccacctgctgctcccggcgagcgaggcgttgctggac
gaaaattcgatcaagcgcttccgcagccgctatcgcgaaatgttcggcgcgaacgctacg
caggatccgctctatcaggcgatcagcgatgggcggcggctggcagggatggagcactgg
ctgccgttgttcgaagatcggatggcgacgctgttcgatcatctggggcaggacgatctg
ctggtcatcgatgcaggtgcgttgcaggcgggcgaagaacggctggccgatgtggtcgat
tatcaccgtcagcgtgtcgaacattccgaaggcagttatcgtccgctggcggtcgattcg
ctttatctgacgggcgacgaattcggggatgcgctgaaaaatcgcccgatccaccgcgca
tcgatctttgccgaaccggagagcgatcatgtgatcgatttcgggttccattcgggccgc
gacttcgcaccggaacgggcgcggggggataacgtctatgccgccgccgccgatcatctg
aaggcagtgggcaaggcgggtaaacggcccatgctggccgcttattccaaaggcagccgc
gcgcgcctgtcctctatcctgaccgaagcgggggcaccgacgcaactggccgattcatgg
caggaagcgctggggctggcggccaaggggaagccggtcgcgcttatcctgccgctcgat
accgggttcaccaacgatcagatcgacctgattaccgagcaggatatgctgggcgatcgg
atggtgcggcgtaagaagcggcgcaaggatgccgacgccttcctggccgaactcgccgcg
ctcaacgctggcgatctggtggtccatgtcgaacacggtatcggccgctatcgcgggctg
gaagcgatcccggtagggaagagccaccacgattgcgcgatgctggaatatgccgggggc
gacaagctttatgtcccggtcgaaaacctcgaagtgctcagccggtatggcgcggcggaa
cagacggttccgctcgaccggctgggcggcgaagcatggcagaaacgccgcgcccgcctg
aaagagcgcattcgcgagatcgctggcgagctgatgattaccgccgccgaacgcgcgctc
cgcacggcaccggcgctggaggcggatggcgacagcttcaaccagtttgtcgaacggttc
ccgtgggaagaaaccgacgatcaggatcgcgccatcagcgatgtgctgggcgatctggcg
tcgggcaagccgatggaccggctggtgtgcggcgatgtcggtttcggcaagaccgaggtc
gcgctgcgtgccgccttcgtcgcggcgatggcgggcaagcaagtcgcggtcgtcgccccg
accacgctgctcgcgcgccagcattacgagaacttttccgcgcgcttttccggcttcccg
ctcaaagtcgggcggcttagccgactggtcggggcgaaggagatgggcgatacccgcgaa
ggtttgcggaaaggggatgtcgatgtcgtggtcggcacgcacgcgatcctctccaaatcg
accgaatttcgcgatctcggtctggtaatcgtcgacgaggaacagcggttcggggttacg
cataaggaaaagctgaagcagttacgtgccgatgtgcacgtgctgacgctcaccgccacg
ccgatcccgcgcaccttgcagatggcgatgagcggtctgcgcgaactctccaccattcag
accccgccggtcgaccgcctcgccgtgcggacctatgtgatggagtgggacgatatggtg
atgcgcgaggctctgctgcgcgaacaccatcgcggggggcagagcttcatcgtcgtcccg
cggatttccgacatggccgaagtggaagactggctgcgcgaacacgtgcccgaagtgaag
ccaatcgccgcccacggccagatgtcgccaaccgaagtcgaagagcggatgagcgcgttc
tacgaagggaaatacgaagttctgctgtcgaccaccattgtcgaaagcgggctggatatt
cccagcgccaataccatcgtgatccaccgcgccgaccgtttcgggctggcgcagctatac
cagctgcgcgggcgtgtggggcgcagcaagctgcgtgcctatgcttacctgaccacgccc
gccgacacagcgctgagcgaagtggcggagaagcgcctgaaagtgctgggcgatctcgac
agtctgggcgcgggattccagctcgccagccacgatctcgatattcgcggcgcgggaaac
ctgctgggcgacgaacaatcgggccatatccgcgaagtgggcttcgaactgtatcagtcg
atgctggaagacgcgattgtcgcggcaaaggccggtgcgatggggctggaaccggcgaag
gatgcgttctccccgcagatcaccgtcgatgcgccgattatgatccccgacgattatgtg
cccgacctcgctgtgcggatggcgctctatcgccgcctcaacgatgccaagggtaaggcc
gagatcgaggcgatggcggccgaaatgatcgaccgcttcggcccgctgccgcaaccgacc
gccaacctcgtgcgactgatagaaatcaagcaacaggcgatcgacgcccatatcgccaag
atcgatgtcggcgcgcgcggcacgctggtgacgttccacaacgacgacttccccgatccg
gcgggcctgatcggctgggtcgaacgggtgggcgaaaccgccaagctacgccccgatatg
aagctggtgctcagtcgcgcatggggcgacccgcagagccgcctgaacggcctgttccag
ctgactaagggcctcagcgccgtcgcgcgcaaggcgaagaagaaggcaggctga
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