Alteromonas sp. I4: AltI4_06790
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Entry
AltI4_06790 CDS
T10627
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alto Alteromonas sp. I4
Pathway
alto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AltI4_06790 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alto03019
]
AltI4_06790 (deaD)
03009 Ribosome biogenesis [BR:
alto03009
]
AltI4_06790 (deaD)
Enzymes [BR:
alto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AltI4_06790 (deaD)
Messenger RNA biogenesis [BR:
alto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AltI4_06790 (deaD)
Ribosome biogenesis [BR:
alto03009
]
Prokaryotic type
rRNA helicases
AltI4_06790 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BBO26291
LinkDB
All DBs
Position
complement(806589..808331)
Genome browser
AA seq
580 aa
AA seq
DB search
MTTNVELTFTDLKLPQPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANLDVEGNYPQLLVLAPTRELAIQVAEAFQAYASFSQKIRVLPIYGGQSYDNQI
RQLKRGVQVVVGTPGRVIDHIKRGTLKLDKLKFLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLNDPKHVKIESKVSTASTIRQRYCQVAGHHKLEALTRI
MEVEPFDGMIIFVRTKTATLELAEKLAARGYDVEPLNGDIPQAARERTVDRLKQGKIDIL
VATDVVARGLDVERVSHVINFDIPYDTESYVHRIGRTGRAGRSGDAILFISHREKRMLHA
IEKTTRQSIESMPIPSISELNETRLSKFKQSVMEATKDDSLEGLMPIVDMLIEENEASPE
VLLAALIKLAQGDEPLLLKESDRPDLHAPRPRRDDDRRGGERDGRNRRDGREGRDSRRKS
PRDSRRPEQGMQRYRIEVGHTHGVKPGNIVGAIANEAGIDSKYIGAIEIYDNFTTVDLPE
GMPKEVKQTLQDTRVSGQRMGLREWSDKPPARKKGPKPRN
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaaacgtcgaactgacctttaccgatctcaaacttccgcaacctatcttacag
gcccttgagaaagttggctacgagaaaccgtcgccaattcaagccgaaagtattcccctg
ttactggaaggccatgacctgcttggtcaggcacaaaccggtaccgggaaaaccgctgct
ttcgctttgcctatgctggcaaatcttgacgtagaaggcaattacccgcaactactagtg
cttgccccaacgcgcgaactggctatccaggttgctgaagcgttccaggcctacgcaagc
ttttcacaaaaaatccgtgtattgccaatatacggcggccagtcttatgacaatcaaatt
cgtcagcttaaacgcggcgtgcaggttgtagtgggtacaccaggtcgagtaattgatcac
attaaacgtggcacattaaagctggataaactgaagtttctggtactggacgaagctgat
gaaatgctgcgtatgggcttcattgacgatgttgaattgatcctgagccacgcgccagaa
gaacgtcagacagctttgttctctgcaacaatgccaggaccaatcaaaaagatcacccag
cgttacctgaatgatcctaagcacgtaaaaattgaatccaaggtcagcaccgccagcacc
attcgccagcgttactgtcaggtggccggtcaccacaagcttgaagctctgacacgtatc
atggaagttgaacctttcgacggtatgatcatctttgttcgtactaaaaccgcaacgtta
gaactggcggaaaagttagctgcccgtggttacgatgtagagccattaaatggtgatatt
cctcaggctgctcgtgaacgtaccgttgaccgccttaagcaaggtaaaattgacatcctg
gttgccaccgacgttgttgcacgtggtttggacgtagagcgtgttagtcacgttattaac
tttgatatcccttacgataccgagagctatgttcaccgtatcggtcgtaccggccgtgcc
ggccgtagcggcgacgctatattgtttatctctcatcgtgaaaaacgcatgcttcacgca
atcgagaaaaccacgcgtcagtctattgagtcgatgccaattccatcgatcagcgaactg
aacgaaacccgtttgagcaagtttaaacaaagcgtaatggaagccacaaaagacgacagt
ctggaaggcctgatgcctattgtggatatgctgattgaagaaaacgaagcaagtcctgaa
gtgttactggctgccctgattaaattagcgcaaggcgatgagccgttgttgttaaaagaa
tcagaccgccctgatctgcatgctccacgcccgcgtcgcgatgatgatcgccgcggtggt
gagcgtgatggacgcaaccgtcgtgatggccgtgaaggacgcgatagtcgccgtaagtca
ccgcgtgacagccgccgtccggaacaaggtatgcagcgttatcgcatcgaagtgggtcac
acccatggcgtaaaaccaggcaatatcgttggcgccattgctaatgaagccggtatcgac
agcaagtacattggtgctatcgaaatttacgacaactttaccactgttgatttaccggaa
ggtatgcctaaagaggtgaagcaaacgctacaggatacccgggtatccggtcagcgcatg
ggactgcgtgaatggtcagataagccaccagcacgcaagaaaggccccaagcctcgtaac
taa
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