Alteromonas sp. I4: AltI4_17730
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Entry
AltI4_17730 CDS
T10627
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
alto Alteromonas sp. I4
Pathway
alto03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AltI4_17730 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alto03400
]
AltI4_17730 (recD)
Enzymes [BR:
alto01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AltI4_17730 (recD)
DNA repair and recombination proteins [BR:
alto03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AltI4_17730 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
AAA_11
UvrD_C_2
Viral_helicase1
Helicase_RecD
SH3_13
UvrD-helicase
AAA_22
SLFN-g3_helicase
PhoH
RecD_N
AAA_16
nSTAND3
PIF1
DEAD
AAA_5
T2SSE
TrwB_AAD_bind
AAA_28
AAA_7
NPHP3_N
UvrD_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
BBO27385
LinkDB
All DBs
Position
2077289..2079184
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AA seq
631 aa
AA seq
DB search
MYSGFSQCNAVLTDIEAIDFFFAQTLCDLLKQDAVFSESDLTQAFHVLLALSVSQRQGNA
CLILDDIADQTLFTAPEKAGSGWEFSSLPSLLSLAGELAASPSLFGKLHLIDNRLYSARY
WQFEQDIKAGIAARLSPVPLDDGQYQRVSDLWSALFNSKSAAEQDWQQVATALSLNQRFA
IISGGPGTGKTYTIARLLMAMQSAWNGELSIMLTAPTGKAAQRLSESIDAALSTFMGNEP
LARLGDKVRQQAMTLHRLLGMPRWGINCKVNADRPLNADVVVVDESSMIDLALMARLFRA
LSPDTRIILVGDPNQLPSVEAGNVLGDILAAIDKSACDTVSASAAAQFAKLCPHLPALNT
NESDSPDCHFTLINAQRFGGDLAEAASAISAGDVQTLVESLEVVKPQSVVNLEGVSRCEP
QSLEKQFAQTAKACFEPINQAGSLSEAMQALQNVRWLTPFRQGEFGAIALNERIETLLSP
TGSAGQFYRGKPIMVVENHYSLRLFNGDVGIVWPAANGQLKAWFVGDNGAFRAVPLTRLP
RFETVYAMTIHKSQGSEFAQLLLCLPEPPSKQAAAICTRELVYTGLTRAKRGCVIMAEPS
TLRNAVALQQRRKTGVKQALAPLFNGLSDGV
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtattcaggattctcccagtgcaatgcggtgctcactgatatcgaggccattgatttt
tttttcgcgcaaaccttgtgtgatttgctgaaacaggacgcggtcttctctgaaagcgat
ctgacacaagcgtttcatgtattactggcattgagtgtaagtcaacgtcaggggaatgcg
tgtttgatactcgacgatattgctgaccaaacgctgtttactgcgccggaaaaagcagga
tctggttgggaattttcgtctttgccgagtttgctttcattagctggtgagttagcagca
tcaccgtcgttatttggtaaattgcatctgattgataaccgcttgtacagcgctcgttat
tggcaattcgaacaggatatcaaagccgggatcgcggcaaggttatcgcctgttcctctt
gatgacgggcaatatcagcgcgtttcggatctctggtctgcgttgtttaattcgaaatcc
gcagcagaacaggactggcaacaggtcgcgactgcactcagtttgaatcagcgtttcgcg
attatctccggtggaccaggtaccggtaaaacctacaccatcgccaggttgctgatggct
atgcaatcggcctggaacggtgagttatctattatgctcacagcccccactggtaaggcg
gcccagcgtttgtcggagtccatcgatgcggcgctaagcacattcatggggaacgagccg
ttggcccgtctgggcgataaggtacgtcagcaagcgatgacactgcaccggttgttaggc
atgccgcgctgggggatcaattgtaaggtgaacgccgaccggccgcttaatgcggacgtg
gttgtggttgatgaaagctccatgattgatctcgcgctgatggctcgtttgttccgggcc
ttgtcgcccgatacccgtattattctggtcggtgatcccaatcagctaccgtcggtagaa
gcagggaatgtgttgggggacatactggccgcaatcgataaaagcgcatgtgacacggta
tcggcaagtgctgcagcacaatttgctaaactttgtccgcatttaccggcccttaataca
aatgaaagcgatagtccggattgccatttcacgctaatcaatgcccaacgctttgggggg
gatttggcagaggccgccagtgcgatttctgcaggtgacgtgcaaaccttggtcgaaagc
ctggaagtggtgaaaccgcagtccgtggtcaatcttgagggcgtgtcacggtgtgaaccg
cagagcctggaaaagcagtttgcccaaacagcgaaagcctgttttgaacccatcaatcag
gccggaagtttaagcgaggcgatgcaagcgctacaaaacgtgcgctggttaacgccgttt
cgacaaggcgagtttggtgccatagcgctgaacgaacgtatcgaaaccctgttgtcacca
acggggagcgccggtcagttctaccggggtaaacccattatggtggtggagaaccattac
agtttacggttgtttaacggtgatgtaggcattgtgtggcctgccgcaaatgggcaactc
aaagcctggtttgtgggggataacggcgcctttcgggcggtcccgttgacccggctaccg
cgatttgaaacggtgtatgccatgacaattcacaaatcccagggctcagagttcgcgcag
ctattgctgtgtttacctgaaccgccttctaaacaagcggcagcgatttgtactcgtgag
ctggtttataccggcctgacaagggctaaacgcggttgtgtgatcatggctgaaccgagt
acattgcgcaatgctgtagcgttacagcagcgcagaaaaaccggtgttaagcaggcttta
gcgcctctgtttaacggcttatccgatggcgtttaa
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