Alteromonas sp. I4: AltI4_34590
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Entry
AltI4_34590 CDS
T10627
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
alto Alteromonas sp. I4
Brite
KEGG Orthology (KO) [BR:
alto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
alto03009
]
AltI4_34590 (rlmD)
Enzymes [BR:
alto01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
AltI4_34590 (rlmD)
Ribosome biogenesis [BR:
alto03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AltI4_34590 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_31
RrnaAD
DREV
PCMT
Methyltransf_11
TRM5-TYW2_MTfase
MTS
Methyltransf_23
DOT1
TRAM
TehB
CMAS
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
BBO29071
LinkDB
All DBs
Position
complement(3943027..3944388)
Genome browser
AA seq
453 aa
AA seq
DB search
MATIYQPKRGKPRRSKQRNTSRQGTLATVTATIDTWDARGRGVSRSHQPVLFADGALPGE
TCRVAITKQKKQVCEGQVVSVEQASEHRIAPFCSLAEQCGGCALQHVAPEPALRWRQQAL
DSQFRRHHRLAALPWQPPIVSAHPGYRRKTRLAVDARDKNNIKLGFRAAGSSAIVDVPDC
PVLVPSLNALLPALHKVVRQLKRPEALGHISLLASNNNVAVTFRITQILSQQDREHLRTF
AEVNQVMLRADYGDNGRELLWGEQDSLKCETANDCYISVTTEDFVQVNHDVNLAMVQQAL
DWLDLQPDDKVLDLFCGLGNFSLPMARKVSHVTAVEGVATMVQRADLSAQQQGITNISWR
CEDLSNSDIVSALTIHDNTKVLLDPSREGAHTVCEQLAKRKVGAIVYVSCNPATLDRDIA
SLLAAGYRINKVALMEMFPYTQHVEMMMLLTPQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggccactatttatcagcctaaacggggtaagcctcgccgctcaaaacagcgaaataca
agccgtcagggaacgttagcaacagtgacggcaaccattgatacctgggatgcgcggggc
cgcggtgtcagccgcagtcatcagccagtgttgttcgccgatggcgccttgcccggcgaa
acctgccgtgtggctattaccaaacaaaaaaagcaagtctgtgaaggccaggtggtcagt
gttgagcaggcgtctgaacatcggattgcgcctttttgctcattagccgaacaatgcggt
ggatgtgcgcttcaacatgttgcacctgaacccgcgttacggtggcgtcaacaagcactg
gactcccagtttcgtcgccatcaccggttagctgctttgccctggcaaccgcctattgtg
agtgcacaccctggctaccggcgtaaaactcgccttgcggttgatgcgcgggataaaaac
aatatcaaactggggttcagggcagctggcagcagtgcaatcgtagatgtgcctgactgc
ccggtattagttccttctttgaatgcactgttgcctgcattgcacaaggtcgttcgccag
cttaaacgcccggaggccttaggccacatcagtttattggcatcaaacaacaacgtggct
gtgacattcaggattacgcagatcttatcgcaacaggaccgcgaacacttgcgcacattc
gctgaagtaaaccaagttatgctgcgggccgattatggtgataacggccgtgagctgctt
tggggggaacaggacagtctgaagtgtgaaaccgccaacgattgttatatctccgtgacc
acggaagactttgttcaggttaatcacgatgtgaatctcgcgatggtgcagcaggcgctg
gattggttagacttgcaacccgacgataaggttctggatttgttttgtgggctgggtaac
tttagtttgccgatggccagaaaagtcagtcacgtgaccgccgttgaaggggttgccact
atggtgcaacgcgccgatctcagtgcgcagcaacagggcataaccaacatcagctggcgc
tgcgaagatctgtcaaatagcgatattgtgagtgcgcttaccattcacgacaataccaaa
gtgttactggacccctcgcgggaaggcgcgcacactgtgtgcgaacaactggcaaaacgc
aaggtcggcgcaatcgtgtatgtatcttgcaaccctgcgacacttgatcgcgacatcgcg
tcgttgctggcagcgggttatcgcattaacaaagtcgctttaatggaaatgtttccgtat
acgcagcacgttgaaatgatgatgctgctgacaccgcaataa
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