Alteromonas sp. I4: AltI4_35320
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Entry
AltI4_35320 CDS
T10627
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
alto Alteromonas sp. I4
Pathway
alto02040
Flagellar assembly
Brite
Transcription machinery [BR:
alto03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AltI4_35320 (rpoD)
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NCBI-ProteinID:
BBO29144
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Position
4028524..4030359
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AA seq
611 aa
AA seq
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MAQSKQSQIKLLIAKGKEQGYLTFSEVNDHLPQDIVDSDQIEDIIRMINDMGIQVAESAP
DSDELLMQETTTDEEVAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTREGEIEIA
KRIEDGINQVQCSVAEYPEAITYLLDQWDLYEAEEIRLSDIISGFVDPNSEEDLAPTATH
VGSELSQEELDDEDDDDDDDDSDDDDDSGVDPEQAREKFAELREQYKVTRKVIEAKGRTH
ETSRKEITALSDIFKEFRLVPKQFDRLVKNMREMMDRVRIQERLVMKYCVMHAKMPKKDF
IKAFAGNETTTAWLDTLLNSGAAYAGLLAQYKEEIERSVSKISQVEQETGLVISDIKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LSERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIVQPLDSATGNSLKD
ATQEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEQLRSFLDE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaagcaagcagtctcagattaaactcctgattgcgaaaggtaaagagcaaggt
tacttaacgttctcagaagttaatgaccacctgccacaggacattgtcgattcggatcag
atcgaagacatcatccgtatgatcaacgacatgggaattcaggtagccgagtcggcaccg
gattctgatgaattgttgatgcaggaaaccaccaccgatgaagaagttgctgaagccgcc
gcgcaagcgttggccacagtagaaagtgaaatcggcagaaccactgacccggttcgcatg
tacatgcgtgaaatgggtaccgtagaattgcttacgcgtgagggcgaaattgaaatcgcc
aagcgtattgaagacggtattaaccaggtgcagtgttcagttgctgagtaccctgaagcg
atcacgtacctgttggatcaatgggacctttacgaagccgaagaaatccgactgagcgat
atcatttctggctttgttgacccgaacagcgaagaagatcttgcccctaccgcgactcac
gttggctctgaattatctcaggaagaactggatgatgaagacgatgacgacgatgatgac
gactcggatgatgacgacgatagcggcgtcgaccctgagcaagcgcgtgaaaagttcgcc
gaattgcgtgaacagtataaagttacccgcaaggtcattgaagccaaaggccgcacgcac
gaaacatcgcgcaaagaaatcactgcgctgagcgatatcttcaaagaattccgtttagta
cctaagcagtttgaccgcttagtgaagaacatgcgtgaaatgatggaccgtgttcgtatc
caggaacgtctggttatgaagtactgtgtcatgcacgcaaaaatgccgaagaaagatttc
attaaagcatttgctggcaacgaaactacaacagcctggttagacaccttattgaacagt
ggcgcagcttacgctggtttgcttgctcagtacaaagaagaaattgagcgtagtgttagc
aagatttctcaggtggagcaggaaaccggcctggtaatttctgacatcaaagacatcaac
cgccgtatgtctatcggtgaagcgaaagcccgccgtgcgaagaaggaaatggttgaagcc
aacctgcgtttggtaatctcaattgcgaagaaatacaccaaccgtggtctgcagttcctg
gatctgattcaggaaggtaacatcggtctgatgaaagcggtagataagttcgaataccgt
cgtggttacaagttctcaacttacgccacatggtggattcgtcaggcaatcacccgttca
attgcggaccaggcgcggactatccgtattccggttcacatgattgagaccattaacaag
ctgaaccgtatttcgcgtcagatgttacaggaaatgggtcgtgagcctacgccggaagaa
ttgtctgaacgcatgctaatgccagaagacaagatccgcaaagtactgaaaattgccaag
gagccaatctcgatggaaacccccatcggtgatgatgaagattcacatctgggtgacttc
attgaggacagcactattgtgcagcctctggactcagcaactggcaacagtcttaaagac
gcgacacaggaagtactggcaggtttaacagcacgtgaagcgaaagtactgcgcatgcgt
ttcggtattgatatgaacaccgaccacacgctggaagaagtaggtaagcagttcgacgtt
acccgtgagcgtattcgtcagattgaggcgaaagccttacgcaaactgcgtcatccaagc
cgctcagagcaactgcgcagcttcctggatgaataa
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