Alteromonas sp. I4: AltI4_40740
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Entry
AltI4_40740 CDS
T10627
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
alto Alteromonas sp. I4
Pathway
alto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AltI4_40740 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alto03019
]
AltI4_40740 (recQ)
03400 DNA repair and recombination proteins [BR:
alto03400
]
AltI4_40740 (recQ)
Enzymes [BR:
alto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AltI4_40740 (recQ)
Messenger RNA biogenesis [BR:
alto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AltI4_40740 (recQ)
DNA repair and recombination proteins [BR:
alto03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AltI4_40740 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
BBO29686
LinkDB
All DBs
Position
4690833..4692686
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AA seq
617 aa
AA seq
DB search
MIATSPSPAPQSDFPSDNTEALARAQQVLEDTFGYREFRDGQAEVIAQLIDGADALVLLP
TGGGKSLCYQIPAMVRDGTGIVVSPLISLMQDQVEQLREAGVKAAYINSSLDPETLQSTT
QGLKDGEYDMVYVSPERLLQPYFLNMLASLPIALFAVDEAHCVSHWGHDFRQDYRGLGLL
KQRFPNVPLIGLTATADTTTQQDILLQLGLIEPLVYRGSFDRPNIRYRVVPKYKAFDQIV
TYIKQQDGSGIIYCNSRAKVDDFNAKLHRQGMRCAAYHAGMEADERAFVQRQFITDKIDI
VVATVAFGMGINKSNVRYVVHHDVPRSIESYYQETGRAGRDGLPAEAMLLFDEKDSARVK
QWIDQGENAERNAIELQKFSAMESFSEAQTCRRQVLLNYFSQFSDKACGNCDICLDPPRP
FDGLVTAQMVLSCILRLEQRFATQYVIDVLRGKSHKRIQESGHEKLSTWGIGKSQSDQYW
HNIINQLIHRGYVRIDVANHAVLRLTEAARAVLKGEVPVELATPRLEIKQDKPARGALKN
YDKALFARLKHLRKVLAQEHDVPPFVIFSDATLAEMSDAKPTSEAQLLEVSGVGKTKLQR
YGDAFLQLIQDYLERDD
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgatagcgacatccccatcccctgctccacagtcagatttcccctcggacaacaccgag
gcgctcgcgcgtgcccaacaagtattggaagataccttcggctatcgcgagttccgcgat
gggcaagctgaagtcatagcacaactgattgacggcgcagatgcgttggtattgttaccc
actggtggcggaaaatcgctgtgttaccagatcccggccatggtacgcgatggcacgggc
attgtggtgtcgcctctcatttctctgatgcaggaccaggttgaacaattacgtgaagcc
ggtgtaaaagcggcttatatcaattcgagcctggacccggaaacactacaaagcactaca
caagggttgaaagacggcgaatacgacatggtgtatgtgtcgcctgaacgtttgttacaa
ccgtattttctgaatatgctggcatcgttaccgattgccttattcgcggtggacgaagcg
cattgtgtgtcccactggggccacgatttccgtcaggattaccggggcttaggcttactc
aagcagcgcttcccgaatgtgcccctcattggtttaaccgccacggcagacaccaccacg
cagcaggatatcctgcttcagttaggattaatcgaaccactggtgtatcggggaagcttc
gacagacccaatattcgctacagggtggtaccaaaatacaaagcattcgaccagattgtt
acttatatcaagcaacaggatggcagcgggattatttactgtaattcacgcgccaaggtg
gatgattttaacgccaagcttcaccgccagggcatgcgttgcgccgcctatcacgcaggt
atggaggcagacgaacgcgcctttgttcagcgacagtttattaccgataaaatcgacatt
gtggtcgccacggtcgcttttggtatgggcatcaataaatccaacgtccgctacgttgtg
caccatgacgtgcctcgaagtattgagagctactaccaggaaaccggccgtgccgggcgt
gacggtttgcctgcggaagccatgttgctgtttgacgaaaaagacagtgcacgagttaag
caatggattgaccagggcgaaaatgccgagcgcaacgcgatagaactccagaagttcagt
gccatggagtcgttctcggaagcacagacctgccgtcgtcaggtgctgctgaactacttt
tcgcaattcagtgacaaagcctgtggtaactgtgatatctgtttggatccgccccgtccg
ttcgatggactggtgacggcacagatggtgctcagctgtattcttcgactggagcaacgc
tttgccacacaatacgtcattgacgtgctgcgcggtaaatcgcacaaacgcattcaggaa
tccggccacgaaaagctctcgacctgggggattggtaagtcgcaaagcgaccagtactgg
cacaatattattaaccagttaattcaccggggctatgtacgtatcgatgttgctaaccat
gcagtgttacgtttgacagaagccgcccgggcagtattaaaaggcgaagtcccagtggaa
ctggcgacaccacgattggaaatcaaacaggataagcccgcgcgcggcgccctgaaaaac
tacgacaaagccctgttcgcgcgtctgaaacatttgcgaaaagtccttgctcaggagcac
gatgtaccgccttttgttattttcagtgatgcgaccctggctgaaatgtcagacgccaaa
cccaccagcgaagcccaactgcttgaagtcagtggcgtgggcaaaaccaaactgcagcgg
tacggcgacgcctttttacaactgattcaggactatctggaacgcgacgactaa
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