Alteromonas sp. RW2A1: BM528_00305
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Entry
BM528_00305 CDS
T10273
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
altr Alteromonas sp. RW2A1
Pathway
altr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
altr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BM528_00305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
altr03400
]
BM528_00305
Enzymes [BR:
altr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BM528_00305
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BM528_00305
DNA repair and recombination proteins [BR:
altr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BM528_00305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
APE04407
UniProt:
A0AAC9JH24
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All DBs
Position
62709..63518
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AA seq
269 aa
AA seq
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MPELPEVEVSRLGVSPHLINNTIDNIIVRERRMRWPIPDDVSLVVGHKINDVKRRAKYLL
IETDVGSLVLHLGMSGKLRVIDASTPLIKHDHVDIVLNTGLCLRLNDPRRFGAVLFQAPN
AALTLFNNLGPEPLTEAFDDNRLFALSRGKKSPVKSFIMDNAVVVGVGNIYANEALFLAG
IDPRRQAGRISAERYKRLTENIKLVLAKAITQGGTTLKDFAQTDGNPGYFAQHLNVYGKK
GENCEVCGNMIQSKVIGQRNTFFCLHCQR
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttaccggaagttgaagttagccgtttaggtgtatcaccgcatctcatcaac
aatacaatcgacaatattattgttcgagaacggcgcatgcgatggcctatacctgacgac
gtctcgttagtggtagggcataaaatcaatgatgttaaacgaagagccaagtatctgcta
attgaaaccgatgtgggcagcttggtactgcatctgggcatgtctggcaagctaagggtt
attgacgcgtctactccgctgataaaacacgatcatgtcgatattgtattaaacacaggc
ctatgtttacgtttaaatgaccctaggcgctttggcgcagtgttattccaagcccccaat
gcagcattgacgctttttaataacttaggcccagagccgcttactgaggcgtttgacgat
aatcgtctctttgcattgtcgcgaggtaaaaaaagcccggtaaaaagctttattatggat
aacgccgtagtggtaggtgtggggaatatttatgccaacgaggctttgtttttagccggt
atcgaccctcgaagacaggcagggcgaattagcgctgagcgatataagcgcttaactgaa
aacattaagctcgtgcttgcaaaggcaatcacgcaaggtggaaccacacttaaagacttt
gctcagaccgatggtaacccgggttactttgctcagcaccttaacgtttatggtaaaaaa
ggtgaaaactgtgaagtgtgtggaaacatgatccaaagcaaagtgattgggcagcgaaac
acttttttctgtcttcattgtcagcgctaa
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