KEGG   Alteromonas sp. RW2A1: BM528_02460
Entry
BM528_02460       CDS       T10273                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
altr  Alteromonas sp. RW2A1
Pathway
altr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:altr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BM528_02460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:altr03021]
    BM528_02460
   03019 Messenger RNA biogenesis [BR:altr03019]
    BM528_02460
Transcription machinery [BR:altr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BM528_02460
Messenger RNA biogenesis [BR:altr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BM528_02460
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA AAA_22 S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: APE07494
LinkDB
Position
554224..555489
AA seq 421 aa
MNLTELKNKPISELVNMAEKMGLENMARARKQDIIFSILKTHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIREVN
FDKPENSRNKILFENLTPLHAADRLRMERGNGSTEDITARVLDLASPIGRGQRGLIVAPP
KAGKTLLLQNIAQSIAANHPECELMVLLIDERPEEVTEMHRLVQGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKQDELQKMWILRKIVHEMSEIDAMEFLISKLSMTKTNNEFFDAMRRQK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttaaccgaattaaagaataaaccaattagcgagttggttaacatggccgaaaaa
atgggccttgaaaatatggctcgcgccagaaaacaagacatcatattctccattttgaag
acgcatgcgaaaagcggcgaagatatcttcggagatggagttttagagattttacaggac
ggtttcggcttcttacgttcagctgactcttcttatcttgcaggtccggatgatatttat
gtatcgccaagccagatacgtcgcttcaatctgcgaactggtgacaccattgcaggaaaa
attcgtccaccaaaagacagtgaacgttactttgcgctgttaaaaatacgcgaagtaaac
ttcgacaagcctgaaaactcacgaaacaaaatcttgttcgaaaaccttactcctttgcat
gcagcagaccgtttgcgcatggaacgtggtaatggctcaacagaagatattacagcgcga
gtacttgatttagcatcgcctattggtcgcggtcagcgcggtcttattgtagcaccgcct
aaagcaggtaaaactcttctacttcaaaatatcgctcaatctattgctgccaaccaccct
gagtgtgagctaatggtattgcttatcgatgagcgtccagaagaagtaacagaaatgcat
cgtcttgtacaaggtgaggtagtcgcatcgacgttcgatgaaccagcaagtcgccacgtt
caagttgcagagatggtaattgaaaaagcgaagcggttggtagagcacaagaaagatgtg
gtcatccttctcgactcaattactcgtcttgctcgtgcctataacacggttattccatca
tcaggtaaagtactcaccggtggtgtagatgccaatgcgttgcacaagccaaagcgtttc
tttggtgctgcccgtaacgttgaagaaggtggtagtttaactattatcgctacagcgctt
atcgataccggctctaaaatggatgaagttatctacgaagagtttaaaggtactggtaac
atggaacttcaccttaaccgcaaaattgcggaaaaacgtgtattcccagctatcgacttt
aatcgttctggtactcgtcgtgaagaacttcttacgaagcaagatgaacttcaaaaaatg
tggatccttcgtaaaatcgttcacgagatgtcagaaattgatgccatggagttcttaatc
agtaagctctctatgacgaagactaacaatgagtttttcgatgcaatgcgaagacaaaaa
agctaa

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