Alteromonas sp. RW2A1: BM528_05960
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Entry
BM528_05960 CDS
T10273
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
altr Alteromonas sp. RW2A1
Pathway
altr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
altr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BM528_05960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
altr03019
]
BM528_05960
03009 Ribosome biogenesis [BR:
altr03009
]
BM528_05960
Enzymes [BR:
altr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BM528_05960
Messenger RNA biogenesis [BR:
altr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BM528_05960
Ribosome biogenesis [BR:
altr03009
]
Prokaryotic type
rRNA processing factors
BM528_05960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
APE07566
UniProt:
A0AAC9JLC2
LinkDB
All DBs
Position
1339977..1343372
Genome browser
AA seq
1131 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAD
RHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFLSLA
GSYLVLMPNNPRAGGISRRIEGDERTELKASLSKLELPDGMGLIVRTAGVGKSYEELEWD
LKVLLKHWEAISEVAEEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQH
IELVRPDFASRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMK
DAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLALSIL
RILEEESIKENTGQIEAQLPVSVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLETPHYQ
VERRRPDDALQDASYEVELMPAVETEKVSTTTAPVKREEPALKGLVAPTTAAPVSQPKPQ
TQAKPAQSSDVPSLFARIGKWINDMFGSDDKSDSSSKDTQKQEEKTSSNYKGKNPRNNRN
SDDRRRKPRKNTRRNGPAGAKDGEQDQQRTPRSEQDDKRNNNKGRKPRRAQQPRDEQQKP
KHDTPKQDKSVKDNVEQQDNQVEKKREVAERRKRRDKRRSVRVNKGDSVNTNAQSAPNAE
SNPAAPKKPESAQNQVERQVERQQADSQADKQPEEQVVTSAPVTEDAAGKPLEKHHAKEK
TVIGSPSETSESTEETQEAAVISESTNDENGQKRESRGRSRRSPRHVRAAGQRRKKEAQQ
NDEGNNAVDKESQNNASQVSVDETQAKQPGNLSPDVEANTDAKVDSATSAETAAKVESAE
AQSEAAPSPAPVKTQETEAPAQQAEEAVEKVADETSEKVAEASPSQDELQFEEAQPEDEV
KQNTSSKAAEAPQSAAVEPKQVEINLEEDTHTDKHSEEATAEAVPSSETPADDSKEPTAT
PSNEAATEARNIDADIDADINAKEDKKVEDKPAAEKASAVVSPLGASGLGKRRASHPMTS
PDSVDDAFVDVELVSKSDDARPSLAVCGKTALVSQASARASAPATLPESVD
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgttaataaatgcaactcaacaagaagagttgcgtgttgcactggtagatgggcaacgc
ttgtacgacctagacatcgaaagtccagggcatgaacaaaaaaaggcaaatatatataag
ggtaagataacccgcgtagaacctagcctagaagccgcatttgtcgattatggtgccgac
cgccacggattccttcctctaaaagaaattgcccgcacgtactttcctaaaggctataaa
tttgaaggtcgccctaacatcaaagatgttatcaaggaaggccaagaagttatcatccaa
attgacaaagaagaacgcggccaaaaaggtgctgcgcttactacgtttttgtctttggca
ggaagctatttagtattgatgcccaacaaccctcgtgcaggtggtatttctcgtcgtata
gaaggcgatgaacgcacagagttaaaagcgtcgttaagcaaattagaacttcctgacggt
atgggcttaattgttcgtactgcgggcgttggtaagtcttacgaagaattagagtgggat
ttgaaagttctgcttaagcactgggaagctatttccgaagttgcagaagagagggaagca
cctttcctaattcaccaagaaagcaacgtaattgtgcgtgctatacgcgattacttacgc
cgcgacattggcgaaattctgatcgataaaacgagtatttatgagcaggctttgcagcat
attgagcttgttcgcccagactttgcaagccgcgtaaaactatatcgtggtgaagtgcct
ttattcagccattatcaaattgagagccagatcgaatctgcttttcaacgagaagttcgt
ctgccttcaggtggctcgattgtcatcgaccctactgaagcgttaacgtcaattgatatt
aactctgcgcgagcaacaaaaggcggagacattgaagaaactgcgcttaacaccaatctt
gaagccgcagatgaaattgcccgtcaattgcgtttacgcgacctaggtggcttggtagtt
atcgactttatcgacatgacgccggttagacatcaacgcgaagtcgaaaaccgcatgaaa
gacgcggttagaagtgatcgcgcacgcgttcagcttggacgcatttctcgttttggctta
ttagaaatgtctcgtcagcgcttacgtccttctctaggcgaatctgcacaccatgtttgc
ccgcgctgctcaggccacggcaccattcgtggaacagaatcgcttgcgctgtctatcctt
cgcatacttgaagaagagagcataaaggaaaatacagggcaaatagaggcacagcttcct
gtttctgtagccacttatctattgaatgagaaacgaaaatctatccagctacttgagaag
cgtcatggtgttgatttgttacttattccaaatgcaaaccttgagactcctcattatcag
gtagagcgccgtcgtccagatgatgcgctgcaagatgcaagctacgaagtagagttaatg
ccagcagtggaaactgaaaaagtatctactacaacagcacctgtaaaacgagaagagccc
gcgcttaaagggcttgttgcgccaactacggcagcacctgtgtctcagccaaagccgcag
acacaagcaaaaccagcgcaatctagcgatgttccttctttatttgctcgcataggtaag
tggattaacgacatgttcggttctgatgataagtcagactcatcgtcgaaagacacgcaa
aaacaagaagagaaaacgtcgtctaattacaaaggtaaaaacccgcgtaataatcgcaat
agtgatgaccgccgtcgtaaacctcgtaaaaatacgcgccgtaatggccctgcgggggca
aaagatggtgagcaagatcagcagcgcactcctcgttcagagcaggacgataaacgcaac
aataacaaaggccgcaaaccgcgcagagcgcagcagcctcgcgacgagcagcaaaagcca
aagcacgacacgcctaaacaagataagtctgttaaagacaatgttgaacagcaggataat
caagttgagaagaaacgcgaagttgccgagcgcagaaaacgtcgtgataagcgtcgcagt
gttcgagtgaacaaaggtgattcagtaaacactaacgcacagagcgcaccaaacgcggaa
agcaatccagctgccccgaaaaagccagagagcgctcagaatcaagtagaaagacaagta
gagagacaacaagcagatagccaagctgataagcaacctgaagagcaagtagtaacttct
gctcccgtaacagaagatgcggcaggaaagcccttagagaagcatcacgctaaagaaaaa
acagtgatcggttcgccatcagaaacgtctgagtctactgaagaaactcaagaagcagcg
gtaatttcagaatcaacaaatgacgaaaatggccagaagcgtgaaagccgaggacgctca
cgtcgttctccgcgtcatgttcgtgctgccggtcaacgtcgtaagaaagaagcccagcaa
aatgatgaaggaaacaatgctgtcgataaagagagtcaaaataatgcttcacaagtaagc
gttgatgaaactcaagccaaacagccaggtaacttatcaccagacgttgaagctaatacc
gacgctaaagtcgacagcgccacaagcgcggaaactgcagcaaaggtagaaagcgcagaa
gctcaatcagaggcggcaccttcgccagctcctgtaaaaacacaagagaccgaagcccct
gctcagcaagctgaagaggctgttgaaaaggtagccgatgagacttctgaaaaagtagca
gaagcaagtccatcacaagatgagttacagtttgaagaagcacaacctgaagacgaagtt
aagcaaaacacttcttcaaaagctgctgaagcacctcagtcagctgcagttgagcctaag
caagttgagattaacttagaagaagatactcatactgataagcactcagaagaggcgact
gctgaagcggtgccatcttcagagacgcctgcagatgattctaaagagccaactgcaact
ccttctaacgaggctgctacggaagcgcgtaacatagatgctgatatagacgctgatata
aacgctaaggaagataaaaaggtagaggataaaccagcagctgagaaagcgtcggcggta
gtatcacctctaggcgcaagcggattaggtaagcgcagagcgtctcatccaatgacgtcg
cctgactctgttgacgatgcgtttgtcgatgttgagttagtctcaaaatctgatgatgcg
cggccttctttggcagtttgtggcaaaactgcgctggtatcgcaagcatcagcacgagct
tctgctcctgcaaccttgcctgagagtgtagattaa
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