Alteromonas sp. OM2203: ACM0P2_03110
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Entry
ACM0P2_03110 CDS
T11346
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
altz Alteromonas sp. OM2203
Pathway
altz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
altz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACM0P2_03110 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
altz03021
]
ACM0P2_03110 (rpoD)
Transcription machinery [BR:
altz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACM0P2_03110 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
V-SNARE_C
TMPIT
EXOC6_Sec15_N
DUF3391
Motif
Other DBs
NCBI-ProteinID:
XPP52371
LinkDB
All DBs
Position
complement(696874..698709)
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AA seq
611 aa
AA seq
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MAQSKQSQIKLLIAKGKEQGYLTFAEVNDHLPQDIVDSDQIEDIIRMINDMGIQVSESAP
DADELLMQEANADEDAAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTREGEIEIA
KRIEDGINQVQCSVAEYPEAITYLLDQWDLYEAEEIRLSDIISGFVDPNDDQDLAPTATH
VGSELSEEELDDEDGDDDEDEDEEEDDSGVDPELARERFTELREQYIKTREVIEKKGRSH
ADARTQINALSDVFKEFRLVPKQFDRMVKNMREMMDKVRIQERLVMKFCVVNAKMPKKDF
IKAFAGNETSTAWLHETIKSGAPYASDLAVNQEEIERCISKMNQVEQETGLVIADIKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LSERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIIQPLDSATGGSLKG
ATQEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEQLRSFLDE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaagcaagcagtctcagattaaactcctgattgcaaaaggtaaagagcaaggt
tacttaacctttgcagaagttaacgaccacctgccgcaagatattgtcgattctgatcaa
atcgaagacataatccgcatgattaatgacatgggaattcaagtatctgaatcagctcct
gatgcagacgaacttctcatgcaagaagcaaatgccgatgaagatgctgcagaagcagca
gcacaggcacttgctactgtagaaagtgaaattggccgtacgactgacccggttcgcatg
tacatgcgtgaaatgggtactgttgaacttcttactcgtgaaggcgaaattgaaatcgct
aagcgaatcgaagatggtatcaatcaggttcagtgttcagttgccgaatatccagaagca
attacatacttattggatcagtgggacctttacgaagcagaagagattcgtctaagcgat
attatttctggctttgttgaccctaatgatgatcaagatcttgctccaacagcaacgcac
gttggttctgaattgtctgaagaagaattagatgatgaagatggcgatgatgacgaagac
gaagacgaagaagaagacgacagcggtgttgaccctgagttagcacgtgagcgctttaca
gagcttcgtgagcagtacatcaagacccgtgaagtcattgagaagaaagggcgctctcac
gcggatgcgcgtactcaaattaacgctttgagcgacgtattcaaagagttccgcttggtt
cctaagcagttcgaccgcatggttaaaaacatgcgcgaaatgatggataaagtgcgcatt
caagaacgccttgttatgaagttttgcgtcgttaacgctaaaatgcctaagaaagatttt
atcaaagcatttgctggcaacgaaacgtcgacagcttggttgcacgaaacaattaagtct
ggtgcaccttatgcctcagatcttgcagttaaccaagaagaaattgagcgctgtatcagc
aagatgaaccaagttgagcaagaaactggcttggtcattgctgatatcaaagacatcaac
cgtcgcatgtctatcggtgaagccaaagcacgccgcgcgaagaaagagatggttgaagct
aacttgcgtcttgttatttcaatcgctaagaagtacaccaaccgcggccttcaattcctt
gaccttatccaagaaggtaatattggcctaatgaaggcagtagataaatttgaataccgt
cgtggttacaagttttctacctatgcaacgtggtggattcgtcaggctattactcgttca
atcgcagaccaggcgcgtactatccgtattcctgttcatatgattgaaacgattaataag
ctaaatcgtatctctcgtcagatgcttcaagaaatgggtcgcgagcctacacctgaagaa
ttatctgagcgcatgttgatgcctgaggataagatccgcaaagtacttaaaatcgctaaa
gagcctatttcgatggaaacccccatcggtgatgatgaagattcacatcttggtgacttt
atcgaggacagcacaattatccagcccctcgattcagcaacaggcggaagcttgaaaggc
gcaactcaggaagtactggcgggtttaacagcaagagaagctaaagtacttcgtatgcgt
tttggtatcgatatgaacaccgaccatacgcttgaagaagtgggtaagcagtttgatgta
acgcgtgagcgtattcgtcaaatcgaagcgaaagcacttcgcaagcttcgtcatcctagc
cgttctgagcagcttcgtagtttcttagacgagtag
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