Alteromonas sp. OM2203: ACM0P2_11860
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Entry
ACM0P2_11860 CDS
T11346
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
altz Alteromonas sp. OM2203
Pathway
altz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
altz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ACM0P2_11860 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
altz03400
]
ACM0P2_11860 (recB)
Enzymes [BR:
altz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ACM0P2_11860 (recB)
DNA repair and recombination proteins [BR:
altz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACM0P2_11860 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
ResIII
AAA_11
DUF3067
Motif
Other DBs
NCBI-ProteinID:
XPP50248
LinkDB
All DBs
Position
complement(2646896..2650900)
Genome browser
AA seq
1334 aa
AA seq
DB search
MSNFTPSSGNDMSIDTQPHANEQGKDNARLLDVVAMPLKGRHLIEASAGTGKTFNITRLY
LRLLLEKKLTVKEILVMTFTKAATEEIKGRIAKTLREALLIWQEAKDNGNKIKDDCDPVY
QHLFNSFDIDESLALLKAAQLELDEASVFTIHGFCQHVITQLAFNSGFAMSLNLGNDTGD
LYLQAAEDYIRKVSKSEDDFRLLAESGWHTPEKLLLEFGTSIKSTLTPLMLSEQDIEHAF
QKRLDELPDTSLAYVKTLSQSVEENEGLLVEQLIKTPAHRKERPQELAALKSWLRSCVDN
AQYYLPPPEAEAFVKGTRYARNSSGVKEILTPVKEFAATLKKVFGEKEKALAKVPVFKLI
VEAIGFIKGRVDKQKKQLGLIDFDDLIRMLADEVVKPSNTLVPELRKKFPVALIDEFQDT
DAKQYAILDAVYPNASSNSTSQTETDRLNDNEESASARDSALLMIGDPKQAIYRFRGGDI
FTYLKAGRQADYRWVMNTNWRSVEGMVKAYNRLFYGAPVASNEPTDVFGFDIKYNPVEFT
SKAAAAKTPLVDPANQRSAMNYVSMCLEEKENTNIMRRKMAQWIAQEIYRLLNEAHFELR
NGETRPVKPQDIAILVKDRTEAGAIKNVLQQKGLACVYLSDRSNLFASAEAKDVLRLLNG
IWHANDTSKVASSLASPLWGYSPQMLIELLYHEDDATWDRAIDKVLSLRDMWLQKGCMSV
LLHLMQDSYFPHADSVERALTNYQHLAEVLEKASTTHQRPEQLLDWLNKQIHKPESDEEL
TLRLESDSQLIRLITQHGSKGLEYPIVFIPYATGYRDAAKNGNSTSQIFTYYDEEKQDLQ
MQLGQTAQAISRVQSESEAEDMRLAYVAVTRAAHRCYMGVIPLTNNEKSALARALGVSGE
EGLGNDWSSVLRRVAEEDESHASYIDGDEFVEVYSGFEQNEVTPKLTALQFTGTASEEWR
LYSFSAMSRLTTTGPVNNTEIAEDTNQNLPSVPVLQTIRDEEIFALNTLSADGEILDGMT
SHHNPFVEMSLVTRSDLRFTLEKGASAGNLLHDILEHSDFSDPTWEETGKELVNRFGLDE
KRTPFLYAWLDEVLQTPLYPNMQLSLSDLTLEQTLREAEFYFPMNDTQWALLKEVLTSHR
QDVAATLGGQAEVAPQLMTAKLQGMMHGFIDLIFEHEGQFFVADYKSTWLGDTLESYTPS
ALFDNNQHHLYDLQYLIYCLALHRYLNNTLPDYEPDIHFGGVYYLYLRGMHPENEQGEGV
FYTDIPSCLLNQLDAIFASRDGTHTYQDKAYELESEVPACEAQSDGTLKSDARVNSPSSN
NGASGQQQFSFDDE
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgagtaattttaccccatcctctggtaacgacatgtcaatcgatacgcagcctcacgcc
aatgagcaaggcaaagataatgcacggctactcgatgttgtggcaatgccgcttaagggg
cgtcatcttattgaggccagcgcgggcacaggtaagacgttcaatatcacccgattgtat
ttacgtttgctgctagagaaaaaacttaccgtaaaagaaatattggtaatgacctttacc
aaggctgccaccgaagagataaaagggcgcattgctaaaaccttgagagaagcgttactg
atttggcaggaagctaaagataatggtaataaaattaaagacgactgcgacccagtctac
cagcatctgtttaatagctttgatattgatgagagtttggctttattaaaagcagcgcaa
cttgagctggatgaagcgtcggtattcaccattcatggcttctgtcagcacgtgatcacg
cagctggcgtttaacagtggctttgccatgtcgttaaatttaggtaatgacacgggcgac
ttgtatcttcaggcagcagaagattacatccgaaaggtgagcaaaagtgaagatgatttt
cggctgttggcagagtctggttggcatacacctgaaaagctattgcttgaatttggtacc
agcataaaaagtactctgaccccactaatgctcagcgagcaagatatcgagcatgccttt
caaaagcggttggatgaattacccgatacatcattggcttatgtaaaaaccttgtcgcaa
agtgtggaagaaaacgaagggctattggttgagcagcttattaaaacccccgcacataga
aaagaaaggccgcaggaattagctgcgctaaaaagctggttgcgctcgtgcgtagataac
gcacagtattatttaccaccgcctgaagcggaagcctttgttaaaggaactcgctatgcg
agaaattcctctggggttaaggaaattctaacacctgttaaagaatttgctgctacgttg
aaaaaggtatttggcgaaaaagaaaaggcccttgctaaagtgccggtatttaagctgatt
gtagaggctattggatttatcaaagggcgtgttgataagcagaaaaagcagcttggcctt
attgattttgatgatctaattcgcatgctggctgatgaggtagtgaagccaagcaataca
ctagtacctgaacttcgcaaaaagtttccggtggcgcttatcgatgagttccaagatacg
gatgccaagcaatacgctattttggacgcggtctatcccaatgcatcgagcaattcgacc
tcacaaacagaaacagaccgtttaaacgataacgaggagagcgcctcggctagagacagc
gcgcttctaatgataggcgaccccaaacaagctatatatcgctttcgcggaggagatatc
tttacctatttgaaagccggtaggcaagctgactatcgctgggtaatgaacacaaattgg
cgttcagtagagggaatggtaaaagcttataaccgactattttatggcgcacctgtcgca
tcgaatgaacctacagatgtgtttggcttcgacatcaaatataaccccgttgaatttacg
tctaaagcggcagcggctaaaacaccgttggttgaccctgctaatcaacgcagtgcaatg
aactacgtaagcatgtgtttggaggaaaaagaaaataccaacatcatgcgtcgtaaaatg
gcccaatggattgcgcaagagatttaccgcttacttaacgaggcacactttgaattaaga
aatggcgagactaggccggtaaaacctcaagacatcgctattttggtgaaagacagaacc
gaggctggggctattaaaaatgtgcttcagcaaaaagggttagcctgtgtgtatttgagc
gaccgaagcaatttgtttgctagtgccgaagcgaaggatgtcctcaggcttcttaacggt
atatggcacgcaaacgatacgagtaaagttgcttctagtttagcgtccccgctttggggc
tatagtccacagatgcttatcgaactgctttatcacgaagatgatgcaacatgggatagg
gcgatagacaaagtattgtctctgcgggatatgtggctgcaaaaaggatgtatgagtgtg
ctgttgcacttaatgcaagatagctatttccctcacgctgatagcgtggagcgagcgcta
acaaattatcagcatcttgcagaagtgctggaaaaagccagtaccactcaccagcgacct
gaacagctactcgactggctaaataaacaaattcacaagccagaaagcgacgaagagctt
acgttacgtcttgaaagtgatagccaactaattcgtttaataacgcagcatggctcaaaa
ggccttgaataccccattgtgttcattccttatgcaacgggctatcgtgatgcggcaaaa
aatggtaattcgacgtctcaaatatttacctactacgatgaagagaagcaagatttgcaa
atgcagttaggtcaaactgcgcaagccatatctcgagtgcaaagtgaaagcgaggcagaa
gacatgcgccttgcctatgttgcggtaacgcgtgcggcacatcgttgttacatgggggtt
attcctcttacaaataacgaaaaaagcgcattggcgcgcgctttaggcgtgagtggggaa
gaaggtttgggtaatgactggtcgagtgtattacgccgtgtggccgaagaagatgaatct
catgcaagctatatagacggtgatgagtttgtggaagtgtattcaggctttgaacaaaat
gaagtaactcctaaacttacggcacttcaatttacgggcaccgcgagcgaggaatggcgg
ctttattcgttttccgccatgagccgtttaacaactactggcccagtgaataatactgaa
atagccgaagatacaaaccaaaaccttcctagtgtccctgtacttcaaactattcgtgat
gaagaaatattcgcgctcaatacattatctgctgatggtgagattctcgacgggatgacg
tcacaccacaacccgtttgttgaaatgagtttagtgacccgaagtgacctgcgttttacg
ctggaaaaaggagcaagcgcgggtaatttgctccacgatattttagagcatagcgatttt
agtgaccctacttgggaagagacgggcaaagaactggtaaatcgttttggattagatgaa
aagcgcacgccttttctatatgcgtggttagacgaagtcttacaaacgccgttatatcct
aatatgcaactaagtttgagtgatttgacccttgagcaaaccctgcgtgaggcggaattt
tacttcccaatgaacgacacacaatgggcgttgcttaaagaggttctaacaagccatcga
caagacgtcgcagctaccctaggtggtcaagctgaagtcgctccacagttaatgaccgca
aaactacaaggcatgatgcatggttttatcgatttgatttttgagcatgaggggcagttt
tttgttgctgattacaagtcgacctggttaggagatacgttagagagctacacaccttca
gcgctttttgataacaatcagcatcacctttatgacctgcagtatttaatttattgcttg
gcactgcaccgttatttaaacaatacattgccagattatgagcccgatattcattttgga
ggcgtctactacctttatttacgcggaatgcatccagaaaacgagcaaggggaaggcgtg
ttctatactgatataccctcatgcttacttaaccaactcgatgctattttcgcaagtagg
gatggtacgcacacctatcaagacaaagcctatgagcttgaaagcgaagtgcctgcatgt
gaagcgcaatcggatggcacgctgaaaagtgatgcgagggtaaactcgccaagctcaaac
aatggagcttcaggtcagcagcaatttagtttcgacgacgagtag
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integrated database retrieval system
