Alteromonas sp. OM2203: ACM0P2_11885
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Entry
ACM0P2_11885 CDS
T11346
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
altz Alteromonas sp. OM2203
Pathway
altz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
altz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACM0P2_11885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
altz03019
]
ACM0P2_11885
Messenger RNA biogenesis [BR:
altz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACM0P2_11885
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
XPP50253
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All DBs
Position
complement(2662243..2663628)
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AA seq
461 aa
AA seq
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MLQPTADDLWFVPLGGTGEIGMNLNLYGHNGQWLMVDCGVSFDEPLIPSYKIKRTHGEGS
KAGTTHRVVAPDPSFIASQKESLAGIVITHAHEDHVGAIPYLWERFQKPIYTTPFTAEVL
RRKLAKSKLANLIPIVEVDAGDIRQIGPFTVNWLAITHSLPEPFALKISTPVGTVLHTAD
WKIDANPITGTPFDVNLYKQLGKENILALVGDSTNATKPGFSISERNCYDGLLSTILPLK
GRVVVGCFGSNIARLISLARVAKKTQRYMGLYGRSLLNMYGIAKQQGIWPDDLPIADAQH
LGYLPPHEVLAVATGSQGEKNTALARLAKDNHPHLQVEKGDTVLFSSIVIPGNEKSVERL
SKSLTDKGVTVIHSEDSSLPIHASGHPCEEELKLMYHWVKPKISIPVHGEHLHLSAHANI
AKESGVLKHYVGQNGDLYRLAPQPSIRRQIVPTGRIPVQQD
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
ttgttgcaaccaacagcggacgacttgtggtttgttcccctaggagggaccggagagatt
gggatgaatcttaatctctatggccacaatgggcagtggctgatggtagattgcggtgtc
tctttcgatgaacccttgataccgagttacaaaatcaaaaggactcatggagaaggtagc
aaagcagggactactcaccgagttgtcgctcccgacccttctttcattgctagtcaaaag
gagtcgctggcaggtattgttattactcatgctcacgaagaccacgtaggtgcaatccct
tatctatgggagagatttcaaaagccaatttacactacgccttttaccgctgaagtactc
cgacgaaaactcgctaaaagtaaattggcaaaccttattccgattgttgaggttgacgct
ggcgatatccgtcaaattgggccatttacagtaaactggctggcgattacccactctctg
cctgagccttttgcattgaaaatatccacaccagtggggaccgttctacatactgctgat
tggaaaattgatgccaaccctattaccggtacaccgtttgacgtaaacctttacaaacag
cttggaaaagagaacatacttgcgctggtaggtgattctactaacgcgacaaaacctggt
ttctccatttccgagcgcaactgttatgatggattactcagcaccattttacccctcaaa
ggcagggtcgttgttggatgctttggtagtaatatcgcgcgccttatttctttagcgagg
gtggcgaaaaaaacgcaacgttacatggggctttatgggcgttcactattaaacatgtac
ggcatcgctaagcagcaggggatttggcctgacgacttgccaattgccgatgcgcaacat
ctcggctatttaccgccacatgaggtgcttgctgtggctacgggtagccaaggcgagaaa
aatacagcgcttgcaaggctagctaaagataatcacccccatcttcaggtcgagaagggc
gatacggtgctgttctcttctatagtgatcccaggcaacgagaaaagcgttgagcgttta
agtaaatcactgacagataaaggagtgacagtgattcatagtgaagacagttctctacct
attcacgctagcggtcacccttgtgaagaagagctcaagcttatgtatcactgggtaaaa
ccgaagatttctattcctgttcatggcgaacacctccatctttctgctcatgccaacatt
gcgaaagagagcggtgttttaaaacattatgtggggcaaaatggtgatttatataggcta
gcaccacagcctagtattagacgtcaaattgttccgacaggtcgtattcccgttcaacaa
gattaa
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