Alteromonas sp. OM2203: ACM0P2_16055
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Entry
ACM0P2_16055 CDS
T11346
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
altz Alteromonas sp. OM2203
Pathway
altz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
altz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACM0P2_16055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
altz03019
]
ACM0P2_16055
Enzymes [BR:
altz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACM0P2_16055
Messenger RNA biogenesis [BR:
altz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACM0P2_16055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
AAA_22
P-loop_SecA
HI1480
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
XPP51042
LinkDB
All DBs
Position
complement(3640175..3641614)
Genome browser
AA seq
479 aa
AA seq
DB search
MSFTHLGLAEPLLKAIEKRGFSTPSPIQEKAIPEILQGRDVLAAAQTGTGKTAGFGLPIL
QRLMSGQPVSGNNIRALILTPTRELAAQVEESIQAFSEFLPLKTAVVFGGVGINPQMMKL
RKGVDVLIATPGRLLDLYQQNAVKFSELEVLVLDEADRMLDMGFIHDIKRVLKLLPKDRQ
SLLFSATFSEEITALARTITRDPVSISTAPANTTVDAVEQHLVTIDKSKKTTALICLIKQ
QKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKSGEIKVLVAT
DIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCVDELQNLKDIET
LIQKLLPRETLEGFEPQQAVPPTTLSKPKKPKKPKAAKTLMDDENSQGEKKARSRRSGQN
QNNKAGNSGNRSGNSSGRSSAGGKPARRRSAGAEGSGAHRSANRRNNYSSSQSSASSTN
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacccatttagggctcgctgaacctttattgaaagctatcgaaaaacgtggg
tttagcacaccatcacctattcaagagaaagccattcctgaaatattacaaggcagagat
gtgttggccgctgcacaaacgggaaccggaaaaacggcgggctttggtcttcctatctta
caaaggctaatgtcgggacagccggtatcgggcaacaatattagagcgcttattttgacg
cctacccgcgagttggccgcccaggtcgaagaaagtattcaggcatttagcgaattttta
ccgcttaaaacggccgtcgttttcggcggcgtcggtatcaatcctcaaatgatgaagctt
cgtaaaggggtcgacgtattaattgcaacacctggcaggctactcgatctttaccagcaa
aacgcagtgaaattttctgagctagaggttttggttcttgacgaagccgacagaatgcta
gacatgggctttattcacgatattaaaagagtgcttaaactattacctaaagatcgtcaa
agtttacttttctctgcaaccttctcagaagagataacggcactagcgagaacaattact
cgtgatccggtaagcatttctactgcacctgcaaatacgacagtggatgcagtagaacag
catttggttactatcgataagtctaaaaaaaccaccgcacttatttgcttaataaaacag
cagaagtgggagcaagtattggtgtttagtcgcactaagcatggcgcaaaccgaatcgcc
gaaaagctcactcgttcaaaaattccaagcgctgcaattcacggaaacaagagccaaggc
gccagaacgaaagcgctcgctgacttcaaaagtggtgaaattaaggttttggttgctact
gatattgccgcccgtggtatagacatcagtgagttaccgatagtggtaaacttagactta
ccgaatacagccgctgactatgtgcatagaattggacgtacaggacgtgcaggagcaagc
ggtcaggcgtggtcgtttgtgtgtgtcgatgaactgcagaaccttaaagatattgaaacg
ctgattcaaaagctgcttcctagagaaaccttagaaggttttgagcctcagcaagccgtt
ccaccaaccacgttgtctaaaccaaagaagcctaagaaaccaaaggctgctaagacgttg
atggacgatgagaatagccaaggtgaaaaaaaagctcgaagcagaagaagtgggcaaaac
caaaacaacaaggcaggaaacagtggtaatcgctcgggtaattcgagcggtaggtcgagt
gcgggtggtaaacctgcgagacgcagaagcgctggagctgaaggtagtggcgcgcatcgc
tcggcaaatcgtcgaaataattattcttcaagccagagcagtgcttcaagcactaactag
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