Aspergillus luchuensis: AKAW2_21053A
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Entry
AKAW2_21053A CDS
T08060
Symbol
YSH1
Name
(RefSeq) endoribonuclease ysh1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
aluc
Aspergillus luchuensis
Pathway
aluc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aluc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AKAW2_21053A (YSH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aluc03021
]
AKAW2_21053A (YSH1)
03019 Messenger RNA biogenesis [BR:
aluc03019
]
AKAW2_21053A (YSH1)
Transcription machinery [BR:
aluc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
AKAW2_21053A (YSH1)
Messenger RNA biogenesis [BR:
aluc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
AKAW2_21053A (YSH1)
U7-dependent histone pre-mRNA processing factors
AKAW2_21053A (YSH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
Lactamase_B_3
Inhibitor_I36
Motif
Other DBs
NCBI-GeneID:
64957438
NCBI-ProteinID:
XP_041539879
UniProt:
A0A146FNP2
LinkDB
All DBs
Position
2:complement(join(3177147..3177736,3177801..3178461,3178520..3179666,3180007..3180104,3180160..3180312))
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AA seq
882 aa
AA seq
DB search
MATKRKASALNAAVDDEPADPTDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAK
EGFSALPFFDEFDLSTVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLI
QDNVRVSSTASSSDQRTTLYTEQDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAA
MFLISIAGLNILFTGDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAAL
MKAITGVLNRGGRVLMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVY
QTYIGAMNDNIKRLFRQRMAEAEASGDKSVSAGPWDFRFVRSLRSLERFDDVGGCVMLAS
PGMLQTGTSRELLERWAPNERNGVVMTGYSVEGTMAKQILNEPEQIPAVMSRATTGLVRR
GMAAGNEEEQKVMIPRRCTVDEVSFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLK
SKLLSLNAEKTVKVKVYTPGNCEEVRIPFKKDKIAKVVGRLAQITPPSEQDDGQLMSGVL
VQNGFNLSLMAPDDLREYAGLTTTAIICKQHITLSSASMDLIKWALEGTFGAIEEVGKPQ
QEVVKKGQEDESDKANGDKVKEEAADEEIPMGDTQTYLVMGCVLIRYYPRTREVELEWEG
NMMNDGVADAVMAVLLTVESSPASVKQSAKHKHHHHHHHHHHHDDDHTHQIPNPHSNVGP
EERFRRLLMMLQAQFGSEITAIERPRLPPNSITNGTTDKVDSDDKSTPVKEEEEEEEEEE
DDLTELEAAEISRLHALGIPFPGLEIKVDKHIARIWLEDLEVECANPALRDRVRVVVERA
VETVASMWAEGPAPATVVAANGESKDQDVSTGLKATAIEAKA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaagcgaaaggcatcggccttgaatgccgcggtggatgacgagccggccgat
ccaacggatgaattggctttctattgtctaggaggtggaaatgaagtcgggcgatcatgt
cacataatccagtataagggcaaaacagtgatgcttgacgctggtatgcatcctgcgaaa
gaaggcttctcagccctgcccttctttgacgaatttgacctcagcacggtagatattctt
ttgatcagccatttccatgttgatcattcctccgcgctcccctatgtgctcagcaagacc
aatttcaagggccgtgtattcatgacacacgccaccaaagccatctacaaatggttgatc
caggataatgtgcgtgtgagcagcacggcctcgtcttcggatcaacgcaccactttgtat
accgagcaggaccatttgtctacgcttcccttaatcgagacgatcgacttcaacacaacg
cacaccatcaatagcattcgcattactcccttccctgctggccacgtccttggtgcggca
atgttcctgatttcgatcgccggcctcaacattctctttaccggtgactactctcgtgaa
gaagacagacatctgattccagccgaagttcccaaaggtgtgaaaatcgacgtgcttatc
acggagtcgacgttcggcatttcgtccaatcccccccgcctggaacgtgaagccgccctt
atgaaagccattaccggagtcctgaatcgcggaggcagggtcttaatgccggtgtttgcc
ctgggtcgcgcccaggaattgttgctcattctggatgaatattgggagacacatcccgaa
cttcagaagatacctatctactatatcggaaatacggctcgcagatgtatggttgtgtat
caaacatatataggtgcaatgaacgataacatcaagcgactcttccgtcagcgtatggcg
gaagcggaagctagtggtgacaagagtgtcagtgcagggccctgggacttcagattcgtc
agaagtttgcgcagcctggaacgtttcgacgatgtaggggggtgtgttatgctggcttca
ccaggtatgctccagacaggaactagtagggagcttctggagcggtgggccccgaacgaa
cgcaatggtgtggtcatgacaggctacagtgttgagggcacaatggccaagcagatcctg
aacgaaccagagcaaatccctgcggtcatgtcaagagcaacgacgggattggtgaggcga
ggcatggctgccggaaatgaagaagagcagaaggttatgattcccagaagatgtacagtg
gatgaggtcagtttcgcagcccatgtagatggagttgagaacagaaatttcattgaggaa
gtctctgcacctgttgtgatccttgtgcacggtgaaaagcaccaaatgatgcgtctcaag
tcgaagctgctcagtcttaacgccgagaagaccgtcaaagtcaaggtctacacgccgggt
aattgcgaagaagttcgcattccgttcaaaaaggacaagatcgcaaaggtagtgggtaga
ttggctcagatcacgcctccttcggagcaagatgatggccagctcatgtccggcgtcctt
gtccagaatggcttcaacttatcattgatggcacccgacgatctccgcgagtatgctggt
ttgaccaccaccgccattatatgcaagcagcatattacgttaagctctgcaagcatggac
ctaatcaaatgggctcttgaaggtacctttggtgccattgaagaagtcggcaaaccacag
caggaagttgtcaagaagggacaggaagatgaatccgacaaagccaacggagacaaagtc
aaggaggaagccgccgatgaagaaatccccatgggagatacgcaaacttacctggtcatg
ggttgcgtgctcatccgatactatcctcgtactcgcgaggtcgaacttgaatgggaaggg
aacatgatgaacgacggagttgctgatgcagtcatggcagtcctcctgactgttgagagc
agccctgcgtcagtgaaacaatccgcaaagcacaagcatcaccatcaccaccaccaccat
caccatcacgacgatgaccacacccaccaaattcccaatccccactctaatgtcggacca
gaagagcgtttccgacgtctcctcatgatgctccaagcccaattcggctccgagatcaca
gccatcgagcgcccacgcctaccccccaatagtattaccaacggcactactgacaaagtt
gactccgacgacaagtcaacccccgtgaaggaagaagaggaggaggaagaggaagaggaa
gatgacctaacagagctagaagcagccgagatttctcgtctccacgcactaggcattcca
ttcccggggctcgaaatcaaggtcgacaagcacatcgcccggatatggctggaagatttg
gaagtggagtgcgccaaccctgcgctaagggatcgggtgcgcgtcgttgtcgaacgagcc
gtggaaaccgtggcgagcatgtgggcagagggacctgcgcctgctacagtggtggctgca
aatggagaaagcaaagatcaggatgtctctacgggattgaaggcgacagcgattgaggct
aaagcgtga
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