Anastrepha ludens (Mexican fruit fly): 128860543
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Entry
128860543 CDS
T10909
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
alud Anastrepha ludens (Mexican fruit fly)
Pathway
alud03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128860543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alud03400
]
128860543
DNA repair and recombination proteins [BR:
alud03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128860543
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
128860543
NCBI-ProteinID:
XP_053954107
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Position
4:complement(108309502..108314060)
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AA seq
1192 aa
AA seq
DB search
MSKKLNKSGSAGGSGTPSNTLFKYFSRSPATAEKKKIPRIPSEEDSKNLSKDMGKENLEN
GRSFDEEPSAKRKLEIDLNHSRSIKMDLDDDEDEDITIKRSKNKRQRIFDSEDEEDIKST
VKAKKEDDKADYKPSDEDDEDSSDDQDVSVTKETFSKKSDEPKQKKPKLEKGSFMEKLAS
LQASATITDAKTAAKNDAKYEKIVCTTSTLDEPVVWPHQKLDFLQPNNIKDKQGRRPDHP
DYDPTTLYVPDKYLNSLSPGVRQWWILKSDNYDCVLFFKVGKFYELYHMDAEIGVQELGF
VYMRGEFAHSGSPEVSFDKMSSILVDRGYKVARVEQTETTDMMSERCKKIKATKFDKVVR
REICQISNRGTQVFGTQCQITPHHQPNYMLAVVEKNESSCSKYGVCYVDTSIGDFYIGEF
EDDKNGSRLLTLLSHHMPVLLIYERGSLSERTQEIFRTMLSAILKDPLPANGSKVCSAEK
TLKQFAENYYAKMSDGKNSADNWPLALRTMQSESDHLGLTPRDDCKLALKALGQCVMYLK
RCQLEEKVLPMARYHLYTPPDMLNESTKAEKPQLAQQQTARRRHMVIDATTLANLRITGE
EYSLQATLDNCCTKFGKRLLHHWICSPSCELDVIVERQQAITELVKHAMVLQDLRALLAP
MPDFERHLAQIHLFGNKRISEGHPDGRAILFEEKLYNKKKIQNFIGILKGFTALMEIPTL
LEGFESPLIKRLTQLQPTGVFPDMAEQLEFFKNAFDHETGAKTGVIAPEQGVDADYDEVL
EKINSINATFKDYLTEQEKFFGCRLTPGGEKNRFQLEVPENAARKAGKAYQLEGQRKGNK
PVRRFSTNETRSLVKQLQNAELERDAILKDLARRIFEKFSNHYELWKQCVDCVANLDVLA
SLTEYARGQQVICVPELQEQNADQQPFVDIAEGYHPCAPVDTFIPNGITLGTGETPAPLS
ILTGPNMGGKSTLMRQVGLLVVMAQIGAHVPAAHCRMSLVDRIFTRLGAQDDIMAGQSTF
LVELNETSLILKHATVNSLVLLDELGRGTATYDGTAIAASVVNYLADLKSRTLFSTHYHN
LIEYFHKDTRITLGHMACMVENEDTEDPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQ
PIIKRAYELSKRVEAIALRRKILSKVVAGAGNKCSDLKEMKNLLLQLKSCRV
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaaattaaataaaagtggtagtgctggtggtagcggcacgccgagtaatacc
ctttttaagtatttttcgcgctcgccggctacagcagaaaagaagaaaatacctagaata
cccagtgaggaagattcaaaaaatttaagcaaagatatgggaaaggagaacttggagaat
gggcgcagttttgatgaagaaccttcagctaagcgaaaacttgagatagacctcaaccat
tctcggagtattaaaatggatttagatgatgatgaggatgaggatattaccattaaacgt
tctaagaataaaagacaacgcatattcgattctgaggatgaagaagatattaaatcaaca
gtaaaagcaaaaaaggaagatgataaagctgattataagccaagtgatgaggatgacgaa
gatagtagtgacgaccaagacgtgtcggtaacaaaagaaacattttcgaaaaaaagtgat
gaacctaaacaaaaaaaacctaaattggaaaagggcagttttatggaaaagttggcgtca
ttgcaagcctcagcaactataacagacgcgaagactgctgcaaagaatgatgctaaatat
gagaagattgtgtgcaccacttccacattagatgagcctgtagtttggccacaccaaaag
ctcgatttcttgcagcccaacaatataaaagacaagcagggcaggcgccctgatcatcca
gactatgatcccacaacactctatgtacctgacaagtacttgaattcgttatcaccgggt
gtacgccaatggtggatattaaaatcggataactatgactgtgtgctcttctttaaagtt
ggcaaattctatgagctatatcacatggacgcagaaataggtgtacaggagctgggattt
gtatatatgcgcggagaattcgcgcattccggttcgccagaagtgagttttgacaagatg
tctagtatactggtcgaccgtggttacaaggtggcgcgcgttgaacaaactgaaaccacg
gacatgatgagcgagcgttgcaaaaagataaaagccacaaagttcgataaggtagtacgt
cgtgagatttgtcagatatccaatcgtggcacccaggtattcggcacacaatgtcagata
acgccacatcatcagccaaattacatgttagctgtggttgaaaagaacgaatccagttgt
agtaaatatggagtttgctatgtggatacatcgatcggtgacttttatattggcgaattt
gaggatgacaaaaatggttcgcgtctgttaactttgctttcgcatcacatgccagtcttg
cttatttatgagcgcggctcgctttccgaacgtacacaagagatcttccgtacaatgctt
tcagccatactcaaagatcccttacctgccaatgggtctaaagtgtgcagcgcagagaag
acgctgaaacaattcgccgaaaattattacgcaaaaatgtcagacggcaaaaatagtgct
gacaattggccattggcgttgcgtacgatgcaatccgaatctgaccatttaggtttaacg
ccacgagatgactgcaagttagcattgaaggctcttgggcaatgcgttatgtatttaaag
cgttgtcaactcgaggaaaaggtgctaccaatggcacgttatcacctttacacgccacca
gacatgttaaatgagtcgacaaaagctgaaaagccgcagttggctcagcaacagacggca
cgtcgccgacacatggttatcgatgcgaccactcttgcaaatctgcgcatcaccggggaa
gagtattcgttacaagctacgctggataattgctgtacaaaattcggcaaacgtttgctt
caccattggatttgctcgcccagctgcgagttagatgtgattgtggaacgacagcaagct
attactgaattggttaaacatgccatggtgttgcaggacttacgtgctttattggcgcca
atgcctgattttgaaagacatctggcgcagatacatttgttcggcaataagcgtatctca
gaaggtcatccagatgggcgtgccattcttttcgaagaaaagttatataataagaaaaaa
atacaaaattttatcggcatactaaagggttttactgcccttatggaaataccaacgctc
ttggaaggatttgaatcaccactcataaagcgtttaacacagttgcagccaaccggcgtc
tttccggatatggcagaacaattagaatttttcaagaatgcctttgaccatgaaacaggt
gcaaagactggcgtaattgcacccgagcagggtgtggatgctgattacgatgaggtattg
gagaaaatcaatagcataaacgctacatttaaagattacctcactgagcaagagaaattc
tttgggtgccgccttacacctggtggcgagaaaaatcgcttccagttggaggtgccagaa
aatgcagctaggaaggcgggcaaagcctaccaattggaaggtcagagaaaaggtaacaag
ccagtgcgacgtttctcaacaaatgaaacacggtcacttgtaaagcaattgcaaaacgct
gagctggaacgtgatgccatactaaaagatttagcaagacgtatatttgagaaattctcc
aatcactatgaactctggaagcaatgtgttgattgtgtggcaaatcttgatgtcttagcc
tcgttaacagagtacgcacgcgggcagcaagtaatctgtgtgccagaattgcaagagcaa
aatgccgaccagcagccattcgttgacattgcagaaggctatcatccgtgcgcacctgtt
gacacattcataccaaatggcatcactctaggcacaggtgaaacaccagcaccgctctca
atacttacaggaccgaatatgggtggcaagagtacgctaatgcggcaagttggcttattg
gtggtgatggcacaaattggcgcgcatgttccagcagcacattgccgcatgtcacttgtc
gaccgtatctttacgcgcttgggtgcacaagatgatatcatggctggccagagcacattc
ctagtggaattaaatgagacctcactgattttgaagcatgctactgtcaacagtctagtg
ctgctggacgagctgggtcgcggtactgccacctatgatggcactgctatagcagcgtcg
gtagtcaactatcttgctgacttgaagagtcgtacacttttctccacacactaccacaat
cttatcgaatacttccataaagatacgcgcatcacattgggccatatggcttgcatggta
gaaaatgaggatactgaagatccgactcaagaaacggtaactttcctatataagtatacg
gccggtgcttgtcccaagtcgtatggcttcaatgcggctaaactggctggtatgccgcag
ccaattataaaacgtgcctatgagctttctaaacgcgtagaggctatcgctttgcggcgc
aagattttgtctaaagtcgttgctggtgctggcaataaatgcagtgatttaaaggagatg
aaaaatttacttttgcagctaaagagttgtcgtgtttaa
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